genome.fa.s6719.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006719.1 Hibiscus syriacus cultivar Beakdansim tig00016801_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65826

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27--69	19	2.3	19	84	8	52	55	6	0	37	1.27
3935--4083	23	6.0	26	70	20	93	51	2	27	19	1.58
3956--4110	23	6.6	23	74	14	138	51	1	26	20	1.57
3980--4066	29	3.2	28	72	20	94	54	2	25	18	1.56
3979--4125	52	3.0	48	77	21	162	50	1	25	22	1.57
3906--4109	75	2.8	72	77	12	206	49	1	28	19	1.59
4034--4103	21	3.3	21	80	9	88	47	0	30	22	1.52
7508--7532	13	1.9	13	100	0	50	32	16	36	16	1.90
10767--10893	63	2.0	61	86	5	175	42	10	3	43	1.57
13122--13174	21	2.5	21	90	0	79	32	32	18	16	1.94
13178--13473	21	14.3	19	75	14	160	22	20	23	33	1.97
13186--13444	21	12.4	21	76	14	241	20	20	25	33	1.97
13178--13472	63	4.7	59	77	12	229	22	20	23	33	1.97
13249--13469	42	5.3	42	90	3	315	20	19	25	34	1.96
14328--14437	21	5.2	21	69	16	93	40	20	17	21	1.92
14321--14440	42	2.9	42	91	0	195	40	21	16	21	1.92
18904--18989	19	4.2	22	68	17	76	45	20	2	31	1.64
26302--26367	31	2.2	30	81	13	73	40	10	4	43	1.59
29663--29710	23	2.1	23	88	0	69	35	12	18	33	1.89
30466--30528	23	2.7	23	90	0	90	38	19	6	36	1.77
30874--30939	25	2.6	25	80	0	87	42	13	9	34	1.76
33397--34104	365	1.9	366	96	0	1310	33	16	14	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33397--34104	183	3.9	183	96	0	1301	33	16	14	35	1.89
35517--35597	3	27.0	3	75	0	72	23	34	6	35	1.80
35521--35609	12	7.4	12	84	0	88	21	34	7	35	1.82
35521--35612	18	5.1	18	77	0	76	20	34	7	36	1.81
35533--35609	36	2.1	36	90	0	118	20	35	9	35	1.85
35521--35612	6	15.3	6	79	0	67	20	34	7	36	1.81
37061--38422	198	6.9	199	97	1	2526	31	16	15	36	1.90
37061--38422	395	3.4	398	96	1	2526	31	16	15	36	1.90
38540--38585	19	2.6	18	82	6	58	58	8	2	30	1.40
38540--38587	18	2.6	18	86	3	60	58	8	2	31	1.39
40367--40432	33	2.0	33	90	0	105	22	48	0	28	1.51
40466--40530	21	3.1	21	80	6	69	15	29	15	40	1.88
43024--43455	225	1.9	227	91	3	721	40	7	7	45	1.60
47471--47500	14	2.1	14	100	0	60	36	26	30	6	1.82
59961--60053	30	3.0	29	74	12	80	44	7	8	39	1.64
60560--60603	2	22.5	2	95	4	81	47	0	0	52	1.00
61595--61627	17	2.1	16	88	11	50	48	3	3	45	1.33
64188--64221	18	1.9	17	88	5	50	55	0	0	44	0.99

Tables:   1

The End!