genome.fa.s6721.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006721.1 Hibiscus syriacus cultivar Beakdansim tig00016821_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124414

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7646--7672	4	6.8	4	100	0	54	22	0	0	77	0.76
8298--8370	29	2.5	29	95	0	128	28	26	15	30	1.96
9070--9112	20	2.2	20	83	8	52	6	2	13	76	1.08
13785--13810	4	6.5	4	100	0	52	23	0	0	76	0.78
14650--14701	26	2.0	26	100	0	104	50	15	15	19	1.79
23075--23147	30	2.4	30	95	0	128	32	24	17	24	1.97
25347--25436	23	4.0	23	91	4	139	22	30	26	21	1.99
25332--25436	46	2.4	44	85	4	140	22	30	25	20	1.99
27313--27378	16	4.1	16	75	14	64	22	1	24	51	1.57
27806--27830	13	1.9	13	100	0	50	44	8	8	40	1.63
31836--31896	17	3.4	17	68	24	52	39	11	19	29	1.87
31824--31887	21	3.2	21	65	26	57	42	12	14	31	1.82
31820--31898	38	2.1	39	97	2	151	40	12	15	31	1.84
33539--33580	3	14.3	3	90	5	68	61	0	0	38	0.96
34138--34496	85	4.3	85	88	3	433	26	20	24	28	1.99
34699--36333	106	15.4	106	94	1	2801	23	18	24	33	1.96
40078--40138	17	3.4	17	68	24	52	39	11	19	29	1.87
40066--40129	21	3.2	21	65	26	57	42	12	14	31	1.82
40062--40140	38	2.1	39	97	2	151	40	12	15	31	1.84
41784--41813	3	10.3	3	92	7	53	63	0	0	36	0.95
41786--41813	14	2.0	14	100	0	56	64	0	0	35	0.94
41842--41883	2	21.5	2	81	13	52	47	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42593--42638	18	2.8	17	78	21	53	45	0	0	54	0.99
42725--42776	23	2.3	23	83	6	61	51	1	1	44	1.23
48764--48796	14	2.4	14	90	10	50	51	0	3	45	1.16
58752--58806	16	3.4	16	92	0	92	58	21	10	9	1.60
61435--61505	34	2.1	34	97	0	133	49	9	11	29	1.71
63547--63598	26	2.0	26	92	0	86	42	3	11	42	1.59
66048--66096	21	2.4	20	80	10	55	61	2	0	36	1.08
66714--66766	22	2.4	22	100	0	106	28	15	15	41	1.87
66777--66813	19	1.9	19	88	0	56	21	16	16	45	1.84
74581--74651	23	3.1	22	76	6	70	38	32	12	16	1.87
75831--75858	3	9.3	3	100	0	56	35	0	0	64	0.94
93821--94173	20	17.5	19	76	14	196	39	23	20	16	1.92
93898--94173	40	6.8	39	86	6	252	37	24	21	16	1.93
93902--94173	60	4.5	60	82	9	284	37	25	20	16	1.94
94284--94364	6	13.5	6	100	0	162	33	50	16	0	1.45
95119--95151	6	5.5	6	100	0	66	0	15	51	33	1.43
95262--95391	20	6.4	20	78	8	138	16	21	24	36	1.94
95262--95369	40	2.7	40	92	0	180	16	22	23	37	1.93
95275--95395	60	2.0	62	90	6	194	17	22	23	37	1.94
95275--95453	20	8.9	19	74	12	121	17	21	21	40	1.92
100530--100563	17	1.9	17	94	5	59	38	0	0	61	0.96
100695--100808	49	2.3	48	83	6	138	27	12	15	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100713--100807	49	1.9	50	89	6	149	25	14	13	46	1.82
111571--111688	21	5.7	21	79	2	96	22	16	23	37	1.94
111622--111664	20	2.2	20	95	0	77	11	20	20	46	1.82
111698--111838	19	7.5	19	71	19	116	19	20	21	39	1.93
111677--111766	41	2.2	41	97	0	171	18	18	23	38	1.93
111570--111726	82	1.9	81	82	7	192	21	17	22	38	1.93
111677--111748	22	3.4	22	73	11	87	18	19	25	37	1.94
111948--111983	5	7.4	5	93	3	56	33	22	44	0	1.53
112200--112253	22	2.5	22	87	0	90	37	27	16	18	1.93
112236--112356	41	3.0	40	84	8	122	38	20	21	19	1.94
112284--112521	61	3.9	61	78	2	271	38	22	20	19	1.94
112365--112520	21	7.6	21	71	4	138	35	24	19	20	1.95
112325--112499	82	2.1	82	89	1	235	39	21	21	17	1.92
112345--112521	41	4.3	41	97	0	327	37	23	19	19	1.94
112284--112499	102	2.1	102	86	1	299	38	21	20	18	1.93
114563--115080	280	1.9	277	90	4	830	49	7	6	37	1.55
115005--115053	26	2.0	24	84	8	62	63	8	0	28	1.23

Tables:   1

The End!