genome.fa.s6722.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006722.1 Hibiscus syriacus cultivar Beakdansim tig00016836_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136976

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8034--8079	24	1.9	24	82	8	58	26	4	0	69	1.07
8203--8248	24	2.0	23	86	4	65	26	0	0	73	0.83
16520--16562	23	1.9	22	90	4	68	41	6	11	39	1.68
22256--22289	16	2.1	17	89	10	54	70	5	0	23	1.09
23725--23796	33	2.2	33	85	5	92	19	11	26	43	1.84
25491--25534	15	2.9	15	82	3	52	38	20	2	38	1.65
25765--25808	21	2.0	22	91	4	72	36	29	20	13	1.91
25774--25839	23	3.0	21	79	12	62	34	25	25	13	1.93
25795--25840	23	2.0	23	91	0	74	34	23	28	13	1.92
31846--31900	28	2.0	28	88	0	83	34	20	16	29	1.94
36285--36363	13	6.3	13	78	19	80	16	46	21	15	1.83
36263--36357	18	5.6	18	82	12	137	16	49	21	12	1.79
36267--36363	31	3.1	31	85	8	128	16	47	21	14	1.82
36263--36363	49	2.1	49	96	0	184	16	48	20	13	1.81
37682--37717	18	2.0	18	88	0	54	52	0	16	30	1.44
38800--38931	48	2.8	48	76	13	137	21	16	18	42	1.89
38817--38931	24	4.8	24	88	6	162	22	17	19	40	1.91
38868--38940	24	3.0	24	86	4	76	21	16	17	43	1.87
41056--41134	13	6.3	13	78	19	80	16	46	21	15	1.83
41034--41128	18	5.6	18	82	12	137	16	49	21	12	1.79
41038--41134	31	3.1	31	85	8	128	16	47	21	14	1.82
41034--41134	49	2.1	49	96	0	184	16	48	20	13	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42439--42474	18	2.0	18	88	0	54	52	0	16	30	1.44
43559--43690	48	2.8	48	76	13	137	21	16	18	42	1.89
43576--43690	24	4.8	24	88	6	162	22	17	19	40	1.91
43627--43699	24	3.0	24	86	4	76	21	16	17	43	1.87
45778--45830	27	2.0	28	82	14	67	33	5	3	56	1.41
50643--50700	28	2.1	28	93	0	98	27	18	13	39	1.89
51788--51831	16	2.9	16	81	18	58	50	0	0	50	1.00
52664--52721	2	29.0	2	100	0	116	50	0	0	50	1.00
53210--53279	14	4.7	14	73	13	68	42	2	4	50	1.37
53220--53282	32	2.0	31	87	3	90	42	3	4	49	1.39
56846--56905	30	2.0	30	86	0	84	26	23	21	28	1.99
57450--57528	35	2.3	35	91	4	124	43	22	0	34	1.54
57450--57544	35	2.7	35	85	6	95	41	26	1	31	1.63
58203--58386	91	2.0	91	97	0	350	47	9	7	36	1.63
58589--58668	35	2.3	35	85	8	101	36	0	18	45	1.50
59464--59619	65	2.4	66	83	9	189	33	16	19	30	1.94
62166--62228	24	2.9	21	73	17	56	28	20	20	30	1.98
62170--62216	24	2.0	24	91	0	76	27	21	23	27	1.99
67448--67584	64	2.1	64	81	12	165	31	16	21	30	1.95
69537--69583	24	2.0	24	95	0	85	29	23	23	23	1.99
69542--69593	24	2.2	24	85	0	68	36	21	21	21	1.95
69574--69675	23	4.4	23	76	2	89	34	25	20	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69590--69680	46	2.0	46	86	0	128	34	24	20	20	1.97
75645--75714	3	23.3	3	94	0	122	64	0	1	34	1.03
76742--76795	25	2.2	25	96	0	99	57	0	0	42	0.98
84398--84475	3	25.3	3	83	5	93	57	2	0	39	1.12
84398--84487	22	4.0	22	87	5	126	57	2	0	40	1.11
93671--93711	21	2.0	21	85	0	55	39	24	7	29	1.82
98893--98936	18	2.4	19	88	7	72	34	31	15	18	1.92
110156--110200	17	2.6	17	96	3	81	24	11	28	35	1.90
112876--112911	3	12.3	3	94	5	65	69	0	0	30	0.89
135055--135103	25	1.9	25	83	4	62	46	0	2	51	1.12

Tables:   1

The End!