genome.fa.s6723.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006723.1 Hibiscus syriacus cultivar Beakdansim tig00016841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149344

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4994--5018	3	8.3	3	100	0	50	32	0	0	68	0.90
13433--13667	34	6.5	39	74	14	105	42	3	7	46	1.49
13431--13667	39	6.5	39	73	15	111	42	3	7	46	1.49
13473--13712	34	6.7	35	78	12	220	43	3	6	46	1.46
13513--13716	38	5.6	36	79	9	157	42	3	6	46	1.49
14947--14976	6	4.8	6	92	8	51	13	0	0	86	0.57
14946--14977	13	2.5	13	100	0	64	12	0	0	87	0.54
19501--20810	94	13.9	94	96	0	2341	33	24	18	23	1.96
20823--21100	80	3.4	80	90	3	403	27	26	21	24	1.99
20831--21184	161	2.2	156	79	6	352	28	24	22	24	1.99
21689--21950	38	7.0	37	81	10	277	43	3	6	46	1.47
21703--21954	75	3.4	71	82	9	274	42	3	6	47	1.47
22564--22588	5	5.0	5	100	0	50	60	20	20	0	1.37
23187--23218	13	2.5	13	94	0	55	15	0	0	84	0.63
23522--23552	12	2.5	13	94	5	55	38	0	0	61	0.96
28507--28569	23	2.8	22	73	7	63	50	11	20	17	1.76
33303--33788	225	2.2	225	97	0	913	30	11	19	38	1.86
34952--35041	40	2.2	41	96	2	164	26	7	14	51	1.69
38555--38640	44	2.0	44	92	0	145	24	15	18	41	1.89
40164--40192	11	2.7	11	94	5	51	0	17	44	37	1.49
40271--40424	41	3.8	40	90	5	188	39	21	19	19	1.92
40355--40447	20	4.6	20	78	2	105	41	21	21	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40355--40469	61	1.9	61	89	3	178	41	21	20	16	1.90
40485--40528	19	2.3	19	100	0	88	40	18	20	20	1.91
49939--49971	12	2.8	12	95	0	57	0	45	0	54	0.99
59572--59603	11	2.9	11	95	0	55	9	9	0	81	0.88
59842--59937	30	3.0	30	78	16	111	40	20	13	25	1.89
59935--59990	20	2.8	20	88	0	85	23	23	17	35	1.95
60955--61014	30	2.0	30	100	0	120	23	10	23	43	1.83
61978--62023	18	2.6	18	89	0	74	17	52	17	13	1.75
62000--62025	13	2.0	13	100	0	52	15	46	15	23	1.83
64614--64643	12	2.5	12	94	0	51	13	10	16	60	1.59
66511--66544	6	5.7	6	85	0	50	32	17	0	50	1.47
69790--69859	34	2.1	34	100	0	140	44	5	5	44	1.51
77231--77275	21	2.1	21	91	0	72	53	0	6	40	1.27
81459--81495	4	9.2	4	87	0	56	24	5	0	70	1.08
82604--82674	24	3.0	24	87	0	97	35	23	26	14	1.93
82664--82725	23	2.7	23	79	0	70	35	27	19	17	1.94
85113--85157	21	2.1	21	83	0	54	33	28	22	15	1.95
85737--85771	18	1.9	18	88	11	54	54	5	17	22	1.64
85828--85871	22	2.0	22	86	4	63	45	0	22	31	1.53
86219--86265	19	2.5	19	86	6	60	34	2	23	40	1.67
86499--86802	149	2.0	149	98	0	581	27	17	20	34	1.95
86781--86825	23	2.0	23	86	0	63	20	24	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89401--89462	17	3.4	17	81	16	79	45	0	0	54	0.99
89403--89467	19	3.4	18	82	17	87	47	0	0	52	1.00
89401--89472	16	4.1	17	73	15	56	43	1	0	55	1.08
89439--89608	91	1.9	92	91	1	279	53	8	4	33	1.51
94273--94322	21	2.4	21	93	0	91	24	4	38	34	1.74
94388--94491	34	3.2	33	85	11	142	36	0	0	62	1.02
94409--94474	32	2.3	28	75	24	75	37	0	0	62	0.96
94883--94925	22	2.0	22	95	0	77	39	2	6	51	1.42
95315--95358	23	1.9	23	85	0	61	29	4	11	54	1.56
95559--95603	12	3.8	12	77	11	56	44	15	20	20	1.87
95558--95612	24	2.3	24	90	0	92	47	16	16	20	1.83
96663--96705	18	2.2	19	84	12	52	39	0	0	60	0.97
101042--101120	38	2.1	38	85	4	106	46	1	5	46	1.32
101266--101303	20	1.9	20	88	0	58	21	26	10	42	1.85
101805--101845	20	2.0	20	95	0	73	43	14	29	12	1.82
105375--105427	21	2.7	19	80	11	61	58	0	1	39	1.09
107780--107869	31	2.9	31	86	4	137	26	18	20	34	1.96
113870--113923	2	27.0	2	100	0	108	50	0	0	50	1.00
114072--114097	2	13.0	2	100	0	52	50	0	0	50	1.00
114531--114632	34	3.0	34	97	0	186	6	17	29	46	1.74
120276--120473	66	3.0	65	93	1	333	31	29	17	21	1.96
124359--124406	24	2.0	24	83	0	60	50	10	8	31	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124494--124533	22	1.9	20	90	10	62	77	2	0	20	0.88
125019--126157	228	5.0	227	86	1	1273	22	25	23	28	1.99
125055--126157	456	2.4	456	84	0	1411	22	26	22	28	1.99
127068--127189	60	2.0	60	85	0	163	33	16	7	42	1.76
134002--134079	18	4.1	18	65	18	50	43	2	3	50	1.34
138605--138835	57	3.9	57	83	7	232	25	14	45	14	1.82
138605--138854	30	8.7	27	78	12	212	25	14	46	14	1.81
138636--138849	60	3.6	59	84	4	254	23	13	48	14	1.79
140782--140868	30	2.9	30	92	0	138	21	13	48	16	1.80
146557--146874	40	7.1	43	63	19	105	24	17	30	27	1.97
146428--147133	135	5.2	135	94	0	1243	25	17	30	26	1.97
147226--147320	35	2.7	34	82	9	95	38	12	17	30	1.87
147507--147576	26	2.6	26	77	6	77	47	11	12	28	1.77
147537--147780	66	3.6	67	78	11	207	43	13	12	30	1.82
147658--147724	28	2.4	28	90	7	102	43	14	8	32	1.77
147740--147823	29	2.9	29	87	10	127	46	15	9	28	1.77
147739--147835	28	3.5	28	82	16	121	47	14	9	28	1.75
148665--148701	16	2.3	16	95	0	65	21	0	27	51	1.48

Tables:   1

The End!