Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006724.1 Hibiscus syriacus cultivar Beakdansim tig00016844_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97069

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1365--1399
17
2.0
18
88
5
54
28
8
2
60
1.41
3318--3356
20
2.0
20
94
0
69
17
25
38
17
1.92
4544--4578
18
2.0
18
88
5
54
20
2
2
74
1.08
5330--5380
26
1.9
27
88
4
77
49
5
19
25
1.71
6413--6453
10
4.1
10
80
0
55
7
9
21
60
1.52
6413--6450
20
1.9
20
94
0
67
5
10
23
60
1.50
7552--7603
23
2.3
23
80
6
61
44
0
1
53
1.11
7854--7940
21
4.1
21
79
2
86
32
16
18
33
1.93
8444--8476
2
16.5
2
100
0
66
48
0
0
51
1.00
11212--11245
2
18.0
2
88
11
54
52
0
0
47
1.00
16273--16698
230
1.9
222
88
9
637
40
15
12
31
1.85
27335--27701
54
6.8
54
90
4
505
20
26
19
32
1.97
27335--27701
163
2.3
160
87
5
501
20
26
19
32
1.97
28105--28184
36
2.2
37
88
2
117
26
15
25
33
1.95
28958--29185
125
1.8
125
83
0
303
26
25
15
32
1.96
29388--29455
3
22.0
3
82
5
82
38
0
1
60
1.06
30749--30781
16
2.1
16
88
11
50
39
0
0
60
0.97
30945--31007
33
2.0
33
84
6
85
41
0
1
57
1.08
30921--31204
128
2.2
128
79
9
297
40
8
8
42
1.64
31197--31263
28
2.5
28
78
21
72
47
1
0
50
1.10
31694--31745
20
2.6
21
76
11
56
26
7
0
65
1.20
38365--38698
114
2.9
114
93
0
560
33
14
19
31
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41268--41388
22
5.5
22
87
0
179
32
13
14
40
1.84
41265--41388
66
1.9
66
93
0
212
31
14
13
40
1.85
41906--42230
166
1.9
168
92
3
548
34
14
12
38
1.84
42233--42836
76
8.0
76
98
1
1169
21
21
23
33
1.97
42233--42836
151
4.0
152
98
0
1169
21
21
23
33
1.97
42796--42894
29
3.4
29
95
0
180
19
19
24
37
1.94
42720--42970
134
1.9
134
97
0
475
20
20
24
35
1.96
42854--43046
76
2.5
76
97
0
359
21
21
24
33
1.97
42644--43180
210
2.6
210
98
0
1047
20
20
24
35
1.96
43006--43104
29
3.4
28
94
5
171
18
19
26
36
1.94
42930--43203
134
2.0
134
98
0
530
20
20
24
35
1.96
43128--43200
29
2.4
31
88
9
123
21
16
21
39
1.92
43140--43203
29
2.2
29
100
0
128
20
18
23
37
1.94
43352--43413
3
20.0
3
83
6
79
37
0
1
61
1.06
44701--44733
16
2.1
16
88
11
50
39
0
0
60
0.97
44786--44815
2
15.0
2
100
0
60
50
0
0
50
1.00
44893--44978
41
2.1
41
82
8
104
45
1
1
52
1.16
44931--44963
17
2.0
17
88
5
50
48
0
0
51
1.00
45168--45234
28
2.5
28
78
21
72
47
1
0
50
1.10
49870--49978
57
1.9
57
84
1
148
33
22
16
26
1.95
51365--51398
16
2.1
16
100
0
68
35
11
38
14
1.83
60094--60130
18
2.1
18
100
0
74
16
10
10
62
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68252--68286
18
1.9
18
88
11
54
22
2
28
45
1.67
73179--73342
75
2.2
76
80
4
188
26
23
18
30
1.98
74115--74158
21
2.1
21
87
8
63
9
20
11
59
1.59
74115--74150
11
3.4
11
96
3
65
8
25
8
58
1.55
74390--74545
64
2.5
63
88
5
235
30
17
21
29
1.97
77196--77259
24
2.9
21
76
17
67
28
18
20
32
1.96
77157--77259
45
2.3
44
83
11
122
26
21
23
29
1.99
83177--83214
20
1.9
20
94
0
67
28
21
23
26
1.99
89690--89715
2
13.0
2
100
0
52
50
0
0
50
1.00
89997--90041
20
2.2
20
96
0
81
26
24
13
35
1.92
91568--91647
30
2.7
30
82
0
97
48
11
15
25
1.77
91733--91766
11
3.1
11
91
0
50
35
11
0
52
1.38
92050--92110
30
2.0
31
84
9
81
39
0
6
54
1.27
92672--92768
26
3.7
26
91
5
158
28
6
11
53
1.60
93136--93170
2
17.5
2
100
0
70
48
0
51
0
1.00

Tables:   1

The End!