genome.fa.s6725.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006725.1 Hibiscus syriacus cultivar Beakdansim tig00016849_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78624

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2476--2655	91	2.0	91	94	0	315	40	9	12	37	1.75
3678--3718	15	2.7	15	96	0	73	43	0	41	14	1.45
4702--4818	33	3.6	33	84	1	146	31	22	2	43	1.67
12691--12729	21	1.9	21	89	5	62	48	23	7	20	1.75
20242--20372	24	5.5	24	78	0	109	48	18	12	20	1.81
22779--22806	14	2.0	14	100	0	56	35	28	21	14	1.92
24390--24445	2	28.0	2	96	0	103	50	0	48	1	1.11
26675--26722	24	2.0	24	100	0	96	29	25	20	25	1.99
32023--32051	2	14.5	2	100	0	58	48	0	0	51	1.00
32600--32638	19	2.1	19	95	0	69	23	25	30	20	1.98
33378--33410	17	1.9	17	88	11	50	36	0	9	54	1.32
37487--37614	60	2.1	60	89	2	195	32	24	10	32	1.89
37590--37638	24	2.0	24	100	0	98	30	20	8	40	1.81
37530--37690	84	1.9	84	94	0	286	29	24	11	34	1.90
37684--37737	18	3.0	18	94	0	99	18	33	20	27	1.96
45882--45911	14	2.1	14	93	0	51	63	3	0	33	1.11
46223--46270	23	2.1	23	88	0	69	35	12	18	33	1.89
46657--46708	22	2.5	21	81	6	61	30	19	7	42	1.79
46390--48006	406	4.0	408	98	1	3118	39	12	8	39	1.74
46390--48006	810	2.0	809	98	1	3136	39	12	8	39	1.74
48446--49156	184	3.9	184	99	0	1368	34	15	15	35	1.89
49148--49195	22	2.2	22	85	7	62	33	10	12	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50608--50678	3	23.7	3	77	0	70	25	33	5	35	1.79
50621--50703	42	2.0	42	87	0	121	21	32	8	37	1.84
50612--50706	6	15.3	6	71	14	50	21	32	7	38	1.81
52160--53963	394	4.6	396	96	2	3312	31	15	15	38	1.88
52160--53963	592	3.0	596	96	2	3318	31	15	15	38	1.88
52160--53963	790	2.3	787	97	1	3368	31	15	15	38	1.88
54044--54084	19	2.2	19	90	0	64	58	9	2	29	1.43
56916--56957	19	2.3	18	88	8	59	21	14	9	54	1.68
56921--56965	19	2.3	18	85	14	63	20	13	8	57	1.62
58616--58650	16	2.2	16	94	0	61	37	20	28	14	1.91
60920--60950	2	15.5	2	93	0	53	51	3	0	45	1.17
61280--61420	60	2.3	61	82	2	169	38	8	24	29	1.85
63066--63118	22	2.4	22	90	0	88	18	15	28	37	1.91
63808--63860	20	2.6	21	81	6	72	33	26	13	26	1.93
63853--63924	20	3.6	20	77	5	83	47	22	19	11	1.80
65206--65256	19	2.7	18	81	6	66	37	0	1	60	1.08
65518--65609	42	2.2	42	92	3	152	47	0	1	51	1.07
66106--66218	43	2.6	44	84	8	126	29	13	4	53	1.59
66146--66388	43	5.7	44	77	10	184	27	19	6	46	1.74
66149--66389	85	2.8	85	84	6	283	27	19	7	46	1.75
66146--66451	128	2.4	127	76	12	293	27	18	6	47	1.73
66204--66428	85	2.6	86	85	4	269	28	19	7	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68381--68422	10	4.4	10	85	11	61	47	0	0	52	1.00
68412--68436	13	1.9	13	100	0	50	48	0	0	52	1.00
68378--68433	10	5.7	9	78	21	51	48	0	0	51	1.00
68389--68422	18	1.9	18	94	5	61	50	0	0	50	1.00
68334--68435	41	2.5	41	82	16	124	46	0	1	50	1.19
68378--68437	21	3.1	18	72	27	52	50	0	0	50	1.00
70582--70666	2	47.0	2	71	19	53	57	1	0	41	1.06
70600--70664	33	1.9	35	90	6	107	58	1	0	40	1.07
74268--74319	26	2.0	25	82	10	61	34	1	1	61	1.18

Tables:   1

The End!