Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006726.1 Hibiscus syriacus cultivar Beakdansim tig00016850_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122775

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8501--8580
39
2.1
37
88
4
115
30
10
7
52
1.62
10301--10325
3
8.3
3
100
0
50
0
64
0
36
0.94
10198--10338
71
2.0
70
90
4
221
23
26
19
30
1.98
10738--10771
2
17.0
2
87
0
50
47
2
2
47
1.32
11135--11190
15
3.6
15
74
9
58
44
12
10
32
1.77
11584--11639
13
4.2
13
76
13
60
48
12
3
35
1.58
11625--11723
33
3.0
33
94
1
164
45
15
7
32
1.73
11718--11757
21
1.9
21
94
0
71
47
7
15
30
1.72
14048--14093
12
3.6
12
81
16
56
17
19
17
45
1.85
14047--14086
15
2.9
14
85
14
57
20
17
15
47
1.83
14175--14232
27
2.2
26
81
12
64
25
17
10
46
1.79
15532--15581
3
17.0
3
80
12
50
34
0
4
62
1.14
15779--15803
12
2.1
12
100
0
50
68
16
8
8
1.38
16817--16880
29
2.2
29
94
0
110
46
12
7
32
1.70
16568--16984
139
3.0
138
87
5
601
43
12
9
34
1.75
16573--16991
137
3.0
137
86
6
571
43
12
9
34
1.75
17534--17599
29
2.3
29
100
0
132
43
3
25
27
1.69
17545--17606
29
2.1
29
90
0
97
41
4
25
27
1.75
17545--17614
29
2.4
29
85
4
79
42
5
24
27
1.77
39763--39803
17
2.4
17
87
0
55
36
17
0
46
1.48
45716--45775
29
2.1
29
100
0
120
20
20
23
36
1.95
54898--54951
14
3.8
13
79
13
54
37
0
0
62
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54910--54956
13
3.6
14
77
13
55
36
0
0
63
0.94
58609--58753
74
2.0
74
87
2
211
41
6
15
36
1.74
60197--60226
13
2.2
14
94
5
53
16
46
23
13
1.82
60565--60616
17
3.2
17
75
10
63
28
30
23
17
1.97
67787--68235
229
2.0
227
94
1
792
44
8
7
39
1.62
68301--68346
20
2.3
19
89
10
74
54
10
17
17
1.70
68468--68514
20
2.4
19
89
10
76
55
10
17
17
1.69
68472--68519
20
2.6
18
84
15
62
56
10
14
18
1.66
70744--70808
21
3.1
21
80
6
69
40
15
29
15
1.88
70842--70907
33
2.0
33
90
0
105
28
0
48
22
1.51
71391--71454
23
2.8
23
82
0
83
37
6
18
37
1.76
71391--71463
23
3.2
23
78
7
76
35
5
19
39
1.75
72978--73008
2
16.0
2
93
6
55
48
0
0
51
1.00
75698--75733
19
1.9
19
94
5
65
72
5
0
22
1.05
76276--76304
13
2.2
13
100
0
58
6
62
31
0
1.22
77010--77124
3
38.7
3
87
5
171
62
0
0
36
1.01
77418--78433
113
9.0
113
96
0
1757
28
19
14
37
1.92
79049--79469
52
8.1
52
97
1
767
36
23
15
24
1.93
79065--79469
206
2.0
207
97
1
769
37
23
15
23
1.93
80026--80067
19
2.2
20
91
4
68
52
11
4
30
1.59
80425--80449
11
2.3
11
100
0
50
8
0
0
92
0.40
80397--80449
14
3.7
14
75
5
52
9
5
0
84
0.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91464--91497
18
1.9
17
94
5
59
70
5
0
23
1.09
92036--92064
13
2.2
13
100
0
58
6
62
31
0
1.22
92765--92884
3
39.7
3
86
5
170
62
0
0
35
1.07
95971--96082
58
1.9
60
85
3
156
38
11
13
36
1.81
98192--98228
19
1.9
19
94
0
65
27
5
13
54
1.61
98434--98581
60
2.5
60
82
2
154
43
4
18
33
1.69
117658--117684
14
1.9
14
100
0
54
40
7
14
37
1.74
119586--119639
17
2.9
20
76
18
62
50
0
0
50
1.00
119693--119737
2
22.5
2
100
0
90
48
0
0
51
1.00
119740--119792
26
2.0
26
100
0
88
45
11
7
35
1.69

Tables:   1

The End!