genome.fa.s6727.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006727.1 Hibiscus syriacus cultivar Beakdansim tig00016852_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121893

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1218--1283	22	3.1	21	72	10	55	22	3	27	46	1.66
2291--2328	11	2.9	14	77	22	55	36	0	5	57	1.21
8831--8863	17	1.9	17	93	0	57	54	12	12	21	1.69
10684--10840	81	2.0	80	96	1	287	43	8	14	33	1.76
11323--11349	13	2.1	13	100	0	54	22	25	14	37	1.93
12430--12479	25	2.0	25	96	0	91	26	32	22	20	1.98
13288--13316	2	14.5	2	100	0	58	48	0	0	51	1.00
14385--15024	325	2.0	323	90	1	1003	23	7	23	45	1.79
23081--23134	12	4.6	12	83	4	74	11	16	48	24	1.79
23132--23231	2	53.0	2	74	11	77	47	0	0	53	1.00
23623--23747	20	6.3	20	86	5	155	40	24	15	20	1.90
23584--23747	59	2.7	59	85	5	188	39	26	14	20	1.90
24170--24201	13	2.5	13	100	0	64	0	6	15	78	0.95
27872--28015	63	2.3	65	80	15	176	29	0	18	52	1.50
28291--28376	39	2.2	39	89	0	127	19	12	18	48	1.80
29625--29662	16	2.5	15	84	12	51	65	0	5	28	1.14
29762--29998	115	2.1	115	92	0	402	24	17	20	37	1.94
29948--29999	20	2.6	20	87	0	77	15	15	26	42	1.87
29989--30079	20	4.6	20	100	0	182	18	20	26	34	1.96
29973--30079	40	2.7	41	92	5	168	19	19	26	34	1.96
29951--30084	60	2.2	61	82	12	170	18	17	26	37	1.93
32799--32828	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35758--35882	34	3.8	34	73	19	129	42	10	16	31	1.81
36239--36277	15	2.7	15	84	4	53	23	5	2	69	1.21
36324--36371	23	2.2	21	85	7	60	33	2	0	64	1.05
36779--36804	2	13.0	2	100	0	52	50	0	0	50	1.00
40807--41156	183	1.9	183	95	0	637	27	21	21	30	1.98
42442--42528	37	2.4	37	88	1	122	25	20	13	40	1.89
42353--42657	102	3.0	102	93	1	486	30	19	13	36	1.90
42544--42612	36	1.9	36	88	5	104	23	18	14	43	1.87
42558--42629	36	2.0	36	83	5	92	26	19	13	40	1.89
42642--42828	67	2.8	65	81	8	180	31	19	10	37	1.86
43147--43379	106	2.2	107	86	2	326	35	25	17	21	1.95
43873--43997	34	3.8	34	73	19	129	42	10	16	31	1.81
44354--44392	15	2.7	15	84	4	53	23	5	2	69	1.21
44441--44493	27	2.0	27	85	10	74	32	1	0	66	1.03
44897--44928	2	16.0	2	100	0	64	50	0	0	50	1.00
44967--45018	26	2.0	27	81	11	63	19	9	0	71	1.13
51371--51447	36	2.1	36	95	0	136	46	3	16	32	1.66
60038--60064	3	9.0	3	100	0	54	66	0	0	33	0.92
63161--63190	14	2.1	14	93	0	51	50	6	0	43	1.28
63277--63360	14	6.2	14	72	14	61	25	0	27	47	1.52
65049--65085	18	2.1	18	100	0	74	5	5	67	21	1.31
65037--65105	15	4.4	15	84	10	84	5	11	68	14	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65903--66364	231	2.0	231	97	1	883	25	20	17	36	1.94
66799--66850	23	2.3	22	75	12	52	34	1	3	59	1.27
67167--67195	15	1.9	15	100	0	58	31	6	6	55	1.53
68518--68612	33	2.9	33	95	0	172	40	23	13	23	1.90
71599--71635	17	2.2	17	95	4	67	75	0	0	24	0.80
83430--83481	21	2.5	21	81	3	61	38	19	25	17	1.93
83467--83544	41	1.9	41	86	0	111	39	21	16	21	1.92
83470--83564	20	4.7	20	80	2	91	34	24	17	23	1.96
83752--83795	22	2.0	22	95	0	79	20	45	15	18	1.85
84059--84096	20	1.9	20	88	0	58	13	15	21	50	1.78
85415--85459	18	2.5	18	88	0	72	26	44	15	13	1.83
85941--86007	20	3.4	20	81	2	73	38	23	22	14	1.92
86055--86112	14	3.9	14	79	16	71	10	17	24	48	1.78
86038--86128	32	2.8	33	94	3	166	12	18	21	47	1.81
86113--86167	20	2.8	19	74	15	58	20	25	20	34	1.96
88033--88068	14	2.6	14	90	0	54	30	0	22	47	1.52
88185--88252	19	3.8	19	85	14	101	47	17	22	13	1.82
88271--88348	20	3.9	20	96	0	138	16	23	23	37	1.94
88259--88346	40	2.4	34	75	20	104	14	23	22	38	1.92
89411--89464	24	2.2	24	90	0	81	24	16	20	38	1.92
89639--89663	12	2.1	12	100	0	50	72	0	28	0	0.86
92166--92202	14	2.6	14	91	0	65	45	24	0	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93561--93627	21	3.2	21	68	4	55	19	20	35	23	1.95
95707--95805	33	3.0	33	89	1	144	39	26	23	11	1.88
95682--95865	19	10.1	19	77	15	174	43	22	22	11	1.85
95861--95927	19	3.5	19	85	2	89	10	16	25	47	1.78
96444--96537	20	4.7	20	80	7	91	23	19	25	31	1.98
96464--96558	41	2.3	41	81	3	111	20	21	23	35	1.96
96608--96648	21	2.0	21	85	0	55	34	31	17	17	1.93
97283--97391	28	4.2	24	74	22	89	52	0	4	43	1.22
97263--97376	25	4.6	25	76	17	96	53	0	4	42	1.21
97318--97386	24	2.8	25	79	16	83	53	0	4	42	1.20
97278--97392	53	2.2	52	77	13	128	53	0	4	42	1.21
97526--97586	14	4.4	14	75	6	54	67	1	0	31	1.01
98727--98759	2	16.5	2	100	0	66	51	0	0	48	1.00
99226--99263	16	2.4	16	91	4	60	42	0	15	42	1.47
99317--99380	27	2.4	27	100	0	128	29	15	17	37	1.91
99372--99429	23	2.5	23	94	0	98	29	15	15	39	1.88
101690--101846	82	1.9	81	94	1	278	42	7	8	41	1.63
112799--112833	17	2.1	17	100	0	70	42	17	5	34	1.73
113911--113979	28	2.4	28	73	9	68	30	1	2	65	1.16

Tables:   1

The End!