genome.fa.s6728.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006728.1 Hibiscus syriacus cultivar Beakdansim tig00016855_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102355

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1487--1541	24	2.3	24	80	0	65	38	20	16	25	1.92
1538--1621	23	3.7	23	75	0	78	33	22	23	20	1.97
1538--1631	46	2.0	46	83	0	116	32	21	24	21	1.97
14616--14831	97	2.2	95	80	11	231	42	15	6	36	1.71
14758--15023	39	6.8	39	80	5	263	42	12	6	38	1.68
14758--15023	117	2.3	117	86	8	357	42	12	6	38	1.68
15050--15159	39	2.8	38	84	5	139	41	13	7	37	1.72
14914--15258	136	2.5	137	84	2	446	42	12	7	37	1.70
15128--15349	98	2.3	96	78	7	243	42	13	6	37	1.70
15280--15466	39	4.8	38	74	16	116	43	13	8	35	1.73
14968--15392	233	1.8	231	83	6	563	42	12	7	37	1.71
15322--15476	39	4.0	39	72	8	127	45	12	7	35	1.69
15515--15920	117	3.5	116	81	6	375	42	12	7	36	1.72
15519--15920	58	6.9	57	78	7	382	43	12	7	36	1.72
15662--15962	58	5.2	57	77	9	216	41	12	8	37	1.74
16084--16232	45	3.3	44	82	10	185	39	18	9	32	1.82
16636--16677	12	3.7	12	75	12	52	40	19	21	19	1.92
16635--16687	22	2.4	22	93	0	88	41	16	22	18	1.90
17628--17753	31	4.0	32	79	9	143	32	20	18	28	1.96
18030--18127	2	49.0	2	95	0	178	50	2	0	47	1.12
18864--18909	20	2.3	20	100	0	92	26	32	15	26	1.95
24851--24897	19	2.5	20	79	10	62	40	2	6	51	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25165--25246	5	16.4	5	92	0	128	41	0	20	37	1.53
28172--28213	20	2.2	19	86	4	57	52	2	2	42	1.27
34883--34981	21	4.8	21	72	6	94	24	17	26	32	1.97
34970--35022	22	2.4	22	93	0	97	16	16	28	37	1.91
35647--35690	6	7.5	6	97	2	81	0	15	52	31	1.44
35761--35804	19	2.3	19	96	0	79	45	18	18	18	1.86
35805--35873	20	3.5	20	91	0	120	43	24	23	8	1.82
39239--39338	32	3.1	32	89	0	137	21	26	24	29	1.99
43672--43696	12	2.1	12	100	0	50	40	0	44	16	1.47
43674--43711	18	2.1	18	90	0	58	36	2	42	18	1.64
46727--46787	3	21.0	3	77	12	65	27	3	1	67	1.16
47294--47341	19	2.5	19	83	12	71	72	2	25	0	0.95
49569--49611	16	2.6	16	85	7	52	32	4	4	58	1.39
61700--61839	46	3.2	42	73	11	122	26	28	18	26	1.98
61688--61899	89	2.4	90	87	3	295	26	28	19	25	1.99
62100--62160	3	21.0	3	77	12	65	27	3	1	67	1.16
62666--62713	19	2.5	19	83	12	71	72	2	25	0	0.95
64942--64984	16	2.6	16	85	7	52	32	4	4	58	1.39
76392--76464	36	2.0	36	94	5	130	36	8	21	32	1.83
78563--78617	21	2.6	21	91	0	92	18	23	18	40	1.91
80621--80681	20	3.0	20	80	4	68	22	31	26	19	1.98
84228--84262	14	2.5	14	85	0	52	48	20	0	31	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85662--85754	42	2.2	42	80	3	107	22	17	39	20	1.92
86234--86342	20	5.4	20	91	0	119	35	19	20	24	1.95
86237--86342	40	2.7	40	83	0	140	35	18	20	24	1.95
86385--86436	20	2.6	20	93	0	86	19	19	23	38	1.93
86556--86596	21	1.9	21	85	5	55	43	14	14	26	1.84
88326--88414	20	4.5	20	84	1	108	46	23	15	14	1.83
88753--88818	22	3.0	22	90	0	105	21	15	39	24	1.91
89015--89087	20	3.7	20	98	0	137	19	20	21	38	1.94
89084--89124	21	2.0	21	90	9	66	43	17	21	17	1.87
90717--90744	5	5.6	5	100	0	56	21	35	21	21	1.96
91779--91828	20	2.5	21	80	9	68	26	0	0	74	0.83
93471--93503	17	1.9	17	88	11	50	33	9	0	57	1.30
98375--98543	76	2.3	74	84	4	221	23	27	27	21	1.99
101346--101403	22	2.6	23	86	2	73	18	24	31	25	1.98

Tables:   1

The End!