Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006729.1 Hibiscus syriacus cultivar Beakdansim tig00016858_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59540

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8693--8727
9
3.9
9
92
0
61
45
20
8
25
1.79
10601--10653
18
2.8
19
80
8
63
37
11
16
33
1.85
12796--12852
24
2.3
24
84
3
78
57
0
1
40
1.09
12814--12903
24
3.6
27
77
14
77
52
0
6
41
1.28
12834--12921
25
3.4
26
76
14
76
51
0
6
42
1.28
13025--13105
23
3.8
22
65
24
57
50
1
12
35
1.48
13029--13171
39
3.7
39
82
9
166
44
1
16
37
1.57
13184--13222
21
2.0
21
90
10
64
66
0
2
30
1.05
15356--15420
32
2.0
32
100
0
130
30
12
47
9
1.72
16957--17049
10
9.8
9
76
15
62
16
26
26
30
1.96
16957--16995
21
1.9
21
89
5
62
17
25
23
33
1.96
16957--17028
28
2.5
29
86
11
103
18
27
25
29
1.98
16957--17049
19
4.8
19
74
19
70
16
26
26
30
1.96
17018--17054
19
1.9
19
100
0
74
10
27
32
29
1.90
17016--17055
9
4.3
9
84
6
53
12
30
30
27
1.93
17052--17109
5
10.8
5
78
14
62
18
51
22
6
1.70
17052--17116
22
3.0
22
100
0
130
18
49
23
9
1.76
17106--17143
7
5.4
7
100
0
76
15
28
28
26
1.96
24290--24383
10
9.8
9
76
13
62
15
25
27
30
1.96
24290--24328
21
1.9
21
89
5
62
17
25
23
33
1.96
24292--24389
19
5.1
19
76
16
78
14
27
27
30
1.95
24290--24364
29
2.5
30
87
8
109
17
25
26
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24291--24389
29
3.4
28
84
5
99
15
27
27
30
1.96
24350--24389
9
4.3
9
84
6
53
12
30
30
27
1.93
24386--24443
5
10.8
5
78
14
62
18
51
22
6
1.70
24386--24450
22
3.0
22
100
0
130
18
49
23
9
1.76
24440--24477
7
5.4
7
100
0
76
15
28
28
26
1.96
28977--29008
13
2.3
15
89
10
50
53
0
37
9
1.34
33965--34008
21
2.1
21
82
0
52
56
0
2
40
1.11
42620--42657
16
2.3
16
95
4
67
28
13
15
42
1.85
42778--42858
33
2.4
34
80
16
96
30
22
12
34
1.91
42859--42907
16
3.3
16
67
21
52
6
32
24
36
1.80
45866--45896
2
15.5
2
93
0
53
48
0
3
48
1.17
46149--46198
18
2.8
18
78
0
55
68
0
8
24
1.16
46252--46299
12
3.5
13
78
15
53
60
2
0
37
1.09
47480--47527
22
2.1
23
88
11
73
56
0
0
43
0.99
47740--47781
20
2.1
20
95
0
75
35
16
21
26
1.94
47839--48472
105
6.0
105
96
0
1133
22
18
25
33
1.96

Tables:   1

The End!