Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000673.1 Hibiscus syriacus cultivar Beakdansim tig00001307_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86809

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1847--1875
2
15.0
2
92
7
51
48
0
51
0
1.00
6005--6055
25
2.0
25
96
0
93
31
21
0
47
1.51
19118--19150
17
1.9
17
88
11
50
54
3
6
36
1.41
30752--30833
29
2.8
29
94
1
137
32
14
9
42
1.79
35513--35603
29
3.0
29
91
4
137
35
13
8
42
1.75
36236--36272
16
2.1
19
85
14
53
51
2
5
40
1.39
37224--37264
22
1.9
22
85
5
57
9
19
17
53
1.70
44755--44785
2
15.5
2
100
0
62
51
0
0
48
1.00
45512--45539
2
14.0
2
100
0
56
50
0
0
50
1.00
45584--45613
2
15.0
2
92
0
51
50
46
3
0
1.18
45613--45642
2
15.0
2
100
0
60
50
0
0
50
1.00
57818--57865
19
2.5
19
93
0
78
27
20
2
50
1.60
58233--58296
23
2.8
23
85
0
92
28
26
26
18
1.98
58307--58529
103
2.2
103
98
0
428
36
25
12
25
1.91
59341--59391
19
2.7
19
100
0
102
23
25
21
29
1.99
59360--59520
64
2.5
64
85
6
193
27
21
18
31
1.97
63994--64057
23
2.8
23
85
0
83
26
23
28
21
1.99
64068--64288
103
2.2
101
95
1
388
36
25
12
25
1.91
65030--65254
64
3.5
63
80
7
231
28
18
20
33
1.96
71756--71799
21
2.0
22
82
4
54
47
2
2
47
1.27
79144--79208
11
5.7
11
75
20
62
53
0
1
44
1.09
79172--79209
2
20.5
2
84
15
55
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83385--83414
4
7.5
4
92
0
51
50
3
23
23
1.64

Tables:   1

The End!