genome.fa.s6732.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006732.1 Hibiscus syriacus cultivar Beakdansim tig00016881_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121374

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1283--1322	20	1.9	20	85	10	53	32	7	32	27	1.85
8522--8565	19	2.2	21	76	19	58	9	15	15	59	1.61
12291--12334	19	2.2	21	76	19	58	9	15	15	59	1.61
16058--16101	19	2.2	21	76	19	58	9	15	15	59	1.61
19826--19869	19	2.2	21	76	19	58	9	15	15	59	1.61
23592--23635	19	2.2	21	76	19	58	9	15	15	59	1.61
26269--26308	20	1.9	20	85	10	53	32	7	32	27	1.85
29885--29924	20	1.9	20	85	10	53	32	7	32	27	1.85
34148--34187	20	1.9	20	85	10	53	32	7	32	27	1.85
38417--38456	20	1.9	20	85	10	53	32	7	32	27	1.85
42688--42727	20	1.9	20	85	10	53	32	7	32	27	1.85
46302--46341	20	1.9	20	85	10	53	32	7	32	27	1.85
50562--50601	20	1.9	20	85	10	53	32	7	32	27	1.85
52646--52691	23	2.0	23	100	0	92	26	8	30	34	1.86
57221--57259	20	2.0	19	85	5	51	46	10	17	25	1.80
59270--59308	20	2.0	19	85	5	51	46	10	17	25	1.80
64521--64565	24	2.0	22	82	8	54	35	15	15	33	1.89
65517--65894	190	2.0	187	98	1	729	37	14	19	28	1.91
66731--66755	12	2.1	12	100	0	50	24	8	32	36	1.84
76445--76485	22	1.9	21	90	5	64	34	36	2	26	1.70
76850--76889	16	2.4	16	91	8	62	82	0	17	0	0.67
78139--78197	24	2.5	24	80	0	73	37	16	16	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81777--81836	24	2.6	23	74	12	68	63	13	13	10	1.52
90218--90252	14	2.4	15	90	4	54	85	2	0	11	0.69
94091--94124	16	2.1	17	89	10	54	23	0	5	70	1.09
98272--98304	16	2.1	16	100	0	66	33	18	6	42	1.75
102761--103442	342	2.0	340	95	0	1220	24	23	11	40	1.87
109839--109877	15	2.5	15	87	4	51	15	12	5	66	1.41
114412--114450	15	2.5	15	87	4	51	15	12	5	66	1.41

Tables:   1

The End!