genome.fa.s6733.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006733.1 Hibiscus syriacus cultivar Beakdansim tig00016885_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113703

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5400--5435	2	18.0	2	100	0	72	50	0	0	50	1.00
6474--6542	15	4.5	15	70	20	54	34	14	1	49	1.53
7250--7340	2	46.0	2	97	2	175	50	0	0	49	1.00
8244--8282	18	2.2	18	100	0	78	28	15	30	25	1.96
9460--9572	49	2.3	49	83	3	129	28	28	8	34	1.87
11361--11404	21	2.1	21	86	0	61	29	27	27	15	1.96
11431--11475	22	2.0	22	86	4	63	31	33	26	8	1.87
12186--12261	31	2.5	31	86	4	100	30	19	21	28	1.97
12248--12319	30	2.4	30	92	0	117	23	20	25	30	1.99
21001--21025	13	1.9	13	100	0	50	8	16	16	60	1.58
21088--21133	18	2.4	20	85	14	78	28	23	4	43	1.73
22643--22696	21	2.6	21	96	0	99	29	25	22	22	1.99
22855--22886	6	5.5	6	96	3	57	31	53	15	0	1.43
23390--23426	6	6.5	6	96	3	60	0	16	54	29	1.43
26593--26655	31	2.1	31	84	3	83	34	6	7	50	1.57
26792--26854	27	2.4	26	89	2	90	55	0	3	41	1.16
26792--26877	26	3.3	26	81	12	88	53	0	3	43	1.18
26792--26872	27	3.0	27	82	14	87	56	0	3	39	1.17
26816--26901	26	3.3	25	83	15	88	50	0	4	45	1.22
33684--33723	20	2.0	20	85	0	53	65	0	2	32	1.06
34649--34674	2	13.0	2	100	0	52	50	0	0	50	1.00
34669--34700	16	2.0	16	93	0	55	34	0	12	53	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36476--36602	60	2.2	58	84	7	166	42	11	7	37	1.71
36715--36765	20	2.5	20	87	6	68	45	5	1	47	1.38
37171--37205	16	2.2	16	90	10	54	42	0	0	57	0.99
38088--38200	56	2.0	56	98	0	217	29	27	27	15	1.96
39734--39810	31	2.5	31	100	0	154	46	16	14	22	1.83
52214--52263	20	2.5	20	100	0	100	62	6	6	26	1.42
52351--52408	27	2.1	28	87	3	82	46	13	8	31	1.74
64449--64545	30	3.2	30	79	4	97	41	11	4	43	1.60
65169--65324	31	5.0	31	96	1	269	37	23	19	19	1.94
65853--65895	20	2.1	21	87	8	63	32	11	6	48	1.66
65859--65905	20	2.2	20	85	7	58	36	12	6	44	1.68
66333--66377	21	2.1	21	87	0	63	15	24	28	31	1.96
75395--75477	21	3.8	22	81	7	89	21	36	24	18	1.95
75393--75455	21	2.9	21	88	4	90	20	34	25	19	1.96
79135--79259	31	4.0	31	92	2	198	37	23	18	20	1.94
79793--79835	20	2.1	21	87	8	63	32	11	6	48	1.66
79799--79845	20	2.2	20	85	7	58	36	12	6	44	1.68
80269--80313	21	2.1	21	87	0	63	15	24	28	31	1.96
81231--81255	13	1.9	13	100	0	50	72	0	4	24	1.02
81874--82357	156	3.1	156	83	5	636	27	15	7	50	1.71
89891--90215	177	1.8	177	87	1	490	26	23	23	26	2.00
96670--96712	20	2.2	20	91	0	68	53	4	2	39	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96647--96744	51	1.9	51	87	0	142	51	6	6	36	1.52
97661--97690	15	2.1	14	93	6	51	30	0	3	66	1.07
97766--97810	21	2.1	21	91	0	72	57	0	0	42	0.98
99520--99552	17	1.9	17	100	0	66	27	42	12	18	1.85
99978--100018	8	4.9	9	85	8	52	48	21	0	29	1.50
100894--100951	20	2.9	20	89	0	89	22	25	22	29	1.99
101747--101827	24	3.4	24	100	0	162	22	24	20	32	1.98
108555--108607	14	4.1	14	79	18	69	13	13	16	56	1.67
108542--108606	24	2.6	24	92	4	103	15	13	15	55	1.70
113035--113088	27	2.0	28	82	10	67	40	1	0	57	1.09

Tables:   1

The End!