Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006734.1 Hibiscus syriacus cultivar Beakdansim tig00016890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84052

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5293--5354
15
4.2
15
89
4
99
30
32
22
14
1.94
5293--5354
29
2.1
30
96
3
117
30
32
22
14
1.94
5830--6006
64
2.8
64
81
3
205
26
18
20
34
1.96
5830--6034
64
3.2
64
81
4
182
27
17
20
34
1.95
12102--12149
15
3.2
15
87
0
78
31
33
18
16
1.94
12234--12304
29
2.5
29
97
2
135
18
21
16
43
1.88
12323--12357
12
2.9
12
100
0
70
40
25
0
34
1.56
12666--12842
64
2.8
64
85
1
221
25
19
22
33
1.97
12666--12890
64
3.5
64
82
3
204
26
20
21
32
1.97
21907--21941
2
17.5
2
100
0
70
51
0
0
48
1.00
29505--29569
19
3.4
19
82
0
76
53
15
10
20
1.71
31184--31226
22
2.0
22
90
0
68
41
25
16
16
1.88
32407--32725
145
2.2
146
85
3
430
28
20
5
44
1.75
32878--32922
9
4.7
9
86
13
63
75
0
0
24
0.80
32880--32916
11
3.5
11
82
14
51
81
0
0
18
0.70
32878--32916
20
1.9
20
94
5
69
76
0
0
23
0.78
34538--34585
17
2.8
17
87
0
60
6
20
41
31
1.77
37899--37930
2
16.0
2
100
0
64
50
0
0
50
1.00
40866--40915
26
1.9
26
84
8
66
56
0
6
38
1.24
42632--42661
2
15.0
2
100
0
60
50
0
0
50
1.00
50945--51168
121
1.8
123
87
3
337
29
9
10
50
1.69
56682--56716
2
17.5
2
100
0
70
0
51
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57088--57186
27
3.6
27
95
1
171
54
11
6
28
1.59
58100--58133
11
3.1
11
91
0
50
52
0
11
35
1.38
58228--58294
29
2.3
29
84
5
82
23
13
13
49
1.77
59832--59876
20
2.2
20
96
0
81
35
13
24
26
1.92
66631--66668
20
1.9
20
94
0
67
26
23
21
28
1.99
66652--66794
64
2.3
63
84
12
195
30
22
16
30
1.96
72573--72629
24
2.5
23
80
8
64
31
21
19
28
1.97
72572--72647
21
3.5
21
71
23
59
32
21
19
26
1.97
72573--72675
45
2.3
45
83
11
124
29
23
21
26
1.99
75272--75425
63
2.4
63
87
7
224
29
22
18
29
1.97
75665--75700
11
3.4
11
96
3
65
58
8
25
8
1.55
75657--75700
21
2.1
21
87
8
63
59
11
20
9
1.59
76450--76500
18
2.6
19
87
9
68
27
17
29
25
1.98
76394--76578
74
2.5
76
78
7
191
31
17
24
26
1.97
76840--76987
79
1.9
79
89
0
233
34
10
27
28
1.89
81415--81449
18
1.9
18
88
11
54
45
28
2
22
1.67

Tables:   1

The End!