genome.fa.s6735.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006735.1 Hibiscus syriacus cultivar Beakdansim tig00016902_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77560

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972--1071	24	4.2	24	74	5	94	47	17	14	22	1.82
965--1073	48	2.3	48	77	0	119	48	16	13	21	1.80
3538--3577	7	5.4	7	88	11	62	25	27	35	12	1.92
3539--3593	8	7.5	8	82	17	75	21	25	38	14	1.92
3539--3577	15	2.6	15	100	0	78	25	25	35	12	1.92
3567--3598	13	2.5	13	100	0	64	12	25	46	15	1.81
3567--3646	31	2.6	31	90	2	135	15	21	47	16	1.82
3595--3629	13	2.7	13	86	0	52	17	20	45	17	1.85
5790--5889	24	4.2	24	74	5	94	47	17	14	22	1.82
5783--5891	48	2.3	48	77	0	119	48	16	13	21	1.80
8374--8413	7	5.4	7	88	11	62	25	27	35	12	1.92
8375--8429	8	7.5	8	82	17	75	21	25	38	14	1.92
8375--8413	15	2.6	15	100	0	78	25	25	35	12	1.92
8403--8434	13	2.5	13	100	0	64	12	25	46	15	1.81
8397--8487	18	5.2	18	79	16	93	16	19	47	16	1.83
8403--8483	31	2.6	31	90	0	135	16	20	46	16	1.83
8429--8464	13	2.8	13	86	0	54	16	19	47	16	1.83
9442--9499	20	2.9	20	94	0	98	37	25	20	15	1.92
9518--9571	19	2.8	19	100	0	108	14	22	16	46	1.84
9518--9600	33	2.3	35	84	10	98	13	22	20	43	1.86
9688--9724	14	2.6	14	86	0	56	48	21	0	29	1.50
11587--11654	20	3.5	19	82	6	82	38	23	23	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11643--11699	14	3.8	14	78	17	69	49	26	15	8	1.74
11627--11705	32	2.4	33	93	2	133	48	24	17	10	1.78
11734--11791	14	3.9	14	75	16	62	12	17	22	48	1.80
11717--11807	32	2.8	33	91	3	157	13	18	20	47	1.82
11792--11835	20	2.2	20	84	4	54	18	22	20	38	1.93
12328--12372	18	2.5	18	85	0	63	15	15	42	26	1.87
13692--13729	20	1.9	20	88	0	58	50	21	15	13	1.78
13993--14036	22	2.0	22	95	0	79	18	15	45	20	1.85
14224--14317	20	4.7	20	80	7	91	23	18	25	32	1.97
14244--14321	41	1.9	41	86	0	111	21	16	23	38	1.93
14204--14318	20	5.7	19	78	9	86	23	17	24	34	1.96
14244--14339	41	2.3	41	80	3	104	20	19	22	36	1.95
15137--15172	18	2.0	18	94	0	63	30	22	33	13	1.93
15354--15403	20	2.5	20	96	0	91	36	38	20	6	1.77
25581--25618	17	2.2	17	100	0	76	34	21	5	39	1.76
25700--25740	17	2.4	17	80	19	50	29	4	2	63	1.28
26728--26768	21	2.1	19	86	9	55	48	4	0	46	1.23
28405--28429	13	1.9	13	100	0	50	52	0	8	40	1.31
30167--30266	33	3.1	32	85	4	139	41	10	10	39	1.72
30142--30266	31	3.9	32	82	4	146	40	9	10	39	1.72
33808--34006	106	1.9	107	93	1	346	33	14	20	31	1.93
44535--44559	10	2.5	10	100	0	50	52	8	0	40	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56211--56269	31	1.9	31	92	0	100	44	8	5	42	1.57
70869--70927	17	3.4	18	77	9	61	66	3	1	28	1.18
70980--71011	16	2.0	16	100	0	64	37	0	0	62	0.95
72193--72356	60	2.7	61	81	5	165	33	20	4	41	1.72
74018--74062	20	2.2	20	96	0	81	24	20	0	55	1.43
76950--76983	18	1.9	18	94	5	61	29	11	11	47	1.76

Tables:   1

The End!