Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006736.1 Hibiscus syriacus cultivar Beakdansim tig00016904_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64517

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
591--747
65
2.4
65
94
2
273
35
22
22
19
1.96
1223--1252
10
3.0
10
100
0
60
50
0
0
50
1.00
1388--1423
8
4.4
8
93
6
63
77
0
0
22
0.76
1388--1423
17
2.2
16
95
5
63
77
0
0
22
0.76
1392--1435
17
2.5
17
88
3
61
72
4
0
22
1.02
2815--2854
5
8.4
5
89
10
66
62
0
0
37
0.95
2870--2932
28
2.3
26
82
15
74
46
7
3
42
1.49
2908--3198
37
8.1
35
72
20
146
44
8
4
41
1.56
2908--3072
36
4.7
36
76
15
141
46
7
4
41
1.53
2979--3183
109
1.9
108
85
10
281
42
8
4
43
1.57
3046--3186
75
1.9
70
90
7
219
41
9
4
43
1.59
3061--3209
75
2.0
73
84
7
194
44
11
4
39
1.61
7468--7511
22
2.0
23
90
4
72
43
20
9
27
1.82
7857--7901
22
2.0
22
91
0
72
11
26
20
42
1.85
12446--12502
23
2.5
23
82
0
69
43
19
14
22
1.86
16694--16738
19
2.4
19
100
0
90
15
33
20
31
1.93
18434--18542
2
54.5
2
100
0
218
49
0
0
50
1.00
19042--19074
2
16.0
2
93
6
57
48
0
3
48
1.17
19283--19323
14
3.2
13
83
12
50
43
4
0
51
1.23
21038--21066
2
15.0
2
92
7
51
48
0
0
51
1.00
22117--22187
22
3.2
22
80
7
90
16
11
19
52
1.74
22131--22204
33
2.2
32
83
9
87
14
9
18
56
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22117--22187
11
6.5
11
67
6
54
16
11
19
52
1.74
22117--22204
11
8.0
11
69
5
52
15
10
19
54
1.69
22145--22215
33
2.2
33
86
0
97
16
9
16
56
1.66
23704--23751
20
2.3
20
71
3
51
31
20
10
37
1.87
26485--26727
82
3.0
82
86
0
333
37
17
9
36
1.81
28570--28604
10
3.5
10
88
0
52
68
0
0
31
0.90
40523--40563
21
2.0
21
90
4
66
19
14
19
46
1.84
42948--42987
21
1.9
21
94
0
71
30
15
7
47
1.72
43210--43264
21
2.6
21
91
0
92
20
25
27
27
1.99
43434--43484
17
3.1
17
75
5
52
37
9
11
41
1.75
43432--43487
15
3.6
15
74
9
58
33
12
12
41
1.81
43578--43609
16
2.0
17
88
11
50
43
21
21
12
1.86
43738--43794
26
2.2
27
81
6
64
59
7
1
31
1.34
44761--44785
11
2.3
11
100
0
50
40
8
8
44
1.63
44731--44872
71
2.0
73
87
2
207
41
7
8
42
1.62
44729--44902
71
2.4
70
77
11
172
44
6
8
40
1.59
44935--44966
3
10.3
3
93
6
55
31
0
0
68
0.90
44919--44963
19
2.2
22
88
11
69
33
0
2
64
1.06
46198--46231
11
3.1
11
91
8
52
35
0
0
64
0.94
46264--46304
3
13.7
3
100
0
82
31
0
0
68
0.90
48032--48076
19
2.4
19
92
3
74
13
13
6
66
1.43
51416--52015
85
7.2
83
79
5
624
30
24
20
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51407--52060
249
2.6
249
94
1
1105
30
25
19
24
1.98
51436--52014
169
3.5
164
79
6
612
30
24
20
24
1.98
52767--52791
11
2.3
11
100
0
50
40
8
8
44
1.63
52737--52872
71
1.9
73
86
3
195
42
7
8
41
1.62
52734--52920
71
2.5
71
78
10
173
44
5
8
41
1.59
52921--52968
15
2.9
16
87
12
62
33
0
2
64
1.05
52937--52968
3
10.3
3
93
6
55
31
0
0
68
0.90
54193--54226
11
3.1
11
91
8
52
35
0
0
64
0.94
54259--54296
3
12.7
3
100
0
76
31
0
0
68
0.90
58060--58102
13
3.0
14
78
18
52
34
2
9
53
1.46
58804--58858
24
2.3
24
100
0
110
34
23
18
23
1.96
62884--62932
26
1.9
25
83
4
62
46
4
16
32
1.65

Tables:   1

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