genome.fa.s6737.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006737.1 Hibiscus syriacus cultivar Beakdansim tig00016905_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79488

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10235--10260	2	13.0	2	100	0	52	50	0	0	50	1.00
18189--18225	20	1.9	19	89	10	58	45	10	24	18	1.81
18377--18449	36	2.0	37	84	5	96	50	4	0	45	1.20
31726--31780	21	2.6	21	91	0	83	12	12	38	36	1.82
37364--37398	2	18.5	2	88	11	56	45	0	54	0	0.99
37916--37966	15	3.4	15	91	0	84	7	66	17	7	1.41
41407--41440	4	8.5	4	86	0	50	23	5	0	70	1.09
42784--42920	21	6.7	21	71	6	75	35	25	18	20	1.95
42889--43020	20	6.6	20	91	0	201	31	27	20	20	1.97
43410--43466	14	3.7	14	70	20	51	8	24	21	45	1.80
43400--43470	33	2.2	33	97	0	133	9	23	18	47	1.78
43398--43448	14	3.0	18	70	24	56	9	23	21	45	1.82
43554--43625	21	3.5	20	79	9	90	51	15	20	12	1.75
43632--43745	19	6.1	19	76	13	103	11	24	18	45	1.82
43662--43745	41	2.1	41	88	2	125	10	25	16	47	1.79
43661--43743	20	4.2	20	81	6	114	12	24	16	46	1.81
45674--45730	14	3.7	14	72	20	51	43	24	22	8	1.81
45688--45779	19	5.4	18	72	24	65	46	28	17	7	1.75
45656--45779	33	3.7	33	91	1	185	45	27	17	8	1.78
45705--45763	14	3.9	14	76	20	64	47	28	16	6	1.72
45775--45947	19	9.6	19	75	15	143	10	19	23	46	1.80
45775--45947	33	4.8	38	80	8	159	10	19	23	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47881--47916	14	2.6	14	95	0	63	33	0	22	44	1.53
48023--48121	19	5.4	19	83	14	136	45	17	23	14	1.84
48023--48140	53	2.2	53	96	3	220	44	17	24	13	1.85
48130--48358	19	12.7	19	80	15	281	14	22	17	44	1.85
48136--48330	53	3.6	53	93	4	311	14	23	16	45	1.84
48154--48372	91	2.5	88	87	9	322	13	22	18	45	1.84
50657--50681	12	2.1	12	100	0	50	0	28	0	72	0.86
50856--50902	24	2.0	24	87	8	69	38	21	14	25	1.92
51596--51786	20	9.6	20	85	4	224	20	17	25	36	1.95
51601--51824	40	5.6	40	85	4	231	20	18	24	37	1.94
51596--51824	60	3.8	60	81	2	237	19	17	24	37	1.94
51792--51889	21	4.8	20	70	10	63	22	18	21	37	1.94
52454--52542	22	4.1	22	69	20	71	73	2	11	13	1.20
52489--52569	18	4.8	17	73	23	64	72	1	8	17	1.15
52467--52568	12	7.8	13	69	21	63	73	1	7	16	1.16
52507--52568	22	2.9	21	77	17	65	72	0	8	19	1.09
52763--52810	3	16.3	3	87	12	73	64	0	0	35	0.94
54697--55150	36	12.9	36	74	11	352	41	12	19	25	1.87
54732--54920	102	1.9	103	86	4	276	41	12	20	25	1.87
54700--55146	174	2.6	174	86	0	608	41	13	19	25	1.87
54869--55130	138	1.9	138	84	1	346	41	12	18	27	1.87
55026--55173	36	4.1	35	85	7	181	41	10	17	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56494--56756	95	2.7	95	85	3	330	31	16	17	34	1.92
58441--58501	16	3.9	16	93	2	97	27	22	6	42	1.78
60926--60967	4	9.8	4	87	10	57	73	0	2	23	0.94
61000--61057	29	2.0	31	83	10	77	65	6	10	17	1.44
68721--68795	37	2.0	37	94	0	132	44	12	12	32	1.78
69059--69101	21	1.9	22	86	13	61	23	2	4	69	1.18
69108--69176	2	34.5	2	88	5	95	44	1	1	52	1.19
69099--69170	26	2.7	26	85	6	83	41	2	2	52	1.30
69096--69162	22	3.0	22	82	4	64	38	2	2	55	1.31
69093--69168	24	3.0	24	80	12	73	38	2	2	56	1.27
69166--69255	40	2.3	39	83	11	103	30	3	3	63	1.27
69483--69527	23	1.9	24	82	13	58	17	11	2	68	1.29
72566--72616	13	3.8	14	82	15	63	74	3	17	3	1.12
72564--72616	28	2.0	27	89	10	83	75	3	16	3	1.10
73673--73775	32	3.2	32	83	2	127	31	10	21	36	1.88
73673--73789	32	3.7	32	80	4	94	30	11	21	36	1.88
75043--75159	36	3.2	36	79	7	128	27	17	13	41	1.87
75225--75480	83	3.1	84	81	3	268	33	22	19	23	1.97
75981--76092	37	3.0	37	88	0	152	38	14	16	31	1.88
76397--76454	2	29.5	2	85	3	73	44	1	1	51	1.21
76604--76628	4	6.2	4	100	0	50	28	0	0	72	0.86
76709--76739	4	7.8	4	100	0	62	22	0	0	77	0.77

Tables:   1

The End!