genome.fa.s6739.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006739.1 Hibiscus syriacus cultivar Beakdansim tig00016914_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163835

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
778--879	43	2.4	43	81	3	116	29	15	12	42	1.84
1406--1446	3	14.7	3	80	14	52	68	0	2	29	1.03
1639--1719	41	2.0	41	95	0	144	25	14	24	34	1.94
1927--2293	130	2.8	129	82	4	387	29	18	19	32	1.96
12555--12592	13	3.0	13	84	7	51	73	13	0	13	1.09
14569--14608	17	2.4	17	86	0	53	32	15	12	40	1.84
14615--14673	17	3.5	17	68	13	50	30	13	8	47	1.73
15326--16841	758	2.0	758	95	0	2748	27	22	11	37	1.89
17090--17124	3	11.7	3	93	0	61	62	0	0	37	0.95
21873--21897	4	6.2	4	100	0	50	24	0	0	76	0.80
22942--23177	110	2.2	109	82	5	271	21	16	15	47	1.83
25680--25781	45	2.3	45	84	0	123	27	17	11	43	1.84
26231--26426	95	2.1	95	85	0	257	28	22	10	38	1.87
31738--32009	45	6.0	45	88	0	391	25	21	13	39	1.90
32510--32564	20	2.6	22	80	11	69	25	20	14	40	1.90
32555--32586	16	1.9	17	93	6	57	25	25	12	37	1.91
32416--32634	92	2.3	92	77	6	226	26	21	13	37	1.91
38718--39034	45	7.2	45	77	9	307	24	20	12	42	1.87
38836--38989	82	1.9	82	90	2	247	24	20	12	42	1.87
38917--39034	44	2.6	45	84	5	159	25	20	12	41	1.87
44449--44481	2	16.5	2	100	0	66	51	0	0	48	1.00
47696--47729	17	2.0	17	94	0	59	44	5	11	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52546--52589	16	2.6	17	89	3	63	18	22	22	36	1.95
56545--56691	31	4.8	31	78	3	163	14	25	29	29	1.95
60604--60679	30	2.5	30	86	2	107	11	22	30	35	1.90
62445--62648	101	2.0	101	97	0	381	23	20	27	28	1.98
62789--62823	16	2.3	15	90	5	52	14	31	28	25	1.95
63574--63649	39	1.9	39	97	0	143	31	11	21	35	1.89
65222--65310	44	2.0	44	91	0	142	15	23	26	33	1.95
74143--74224	30	2.7	30	84	3	103	45	8	19	26	1.79
78349--78407	31	1.9	31	86	3	84	35	8	20	35	1.83
79481--79533	7	7.4	7	82	2	61	15	1	24	58	1.47
79481--79530	21	2.4	21	96	0	91	16	2	24	58	1.49
82161--82198	13	2.9	13	88	11	60	76	0	23	0	0.79
88511--88544	8	4.0	8	85	14	50	14	2	0	82	0.79
88510--88543	9	3.8	9	84	0	50	11	2	0	85	0.71
88511--88548	18	2.0	20	90	10	62	18	5	0	76	0.97
92742--92775	15	2.3	15	100	0	68	52	0	26	20	1.46
96543--96579	10	3.7	10	85	0	56	8	2	2	86	0.76
96767--96800	15	2.3	15	94	0	59	52	2	23	20	1.60
100593--100634	19	2.2	18	84	16	50	9	7	2	80	0.97
100822--100855	15	2.3	15	94	0	59	50	0	26	23	1.50
105514--105569	26	2.2	26	81	9	62	50	10	1	37	1.48
106094--106226	57	2.3	56	81	10	162	25	9	16	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106097--106491	190	2.1	190	87	3	555	25	7	16	50	1.71
107327--107610	123	2.3	124	86	3	394	44	21	5	28	1.75
115545--115595	6	8.7	6	78	18	54	1	1	17	78	0.94
115545--115596	18	2.9	18	86	13	72	3	1	17	76	1.02
131339--131390	28	2.0	26	85	14	72	50	5	17	26	1.69
131575--131613	15	2.6	15	91	0	60	71	2	10	15	1.23
131523--131616	44	2.1	44	82	7	111	58	8	18	14	1.61
131792--131823	15	2.1	15	94	0	55	46	0	21	31	1.52
131816--131855	15	2.5	16	88	8	55	37	0	25	37	1.56
133904--133953	25	2.0	25	84	0	64	18	20	0	62	1.34
135074--135181	36	2.9	37	71	17	107	50	4	9	36	1.55
135149--135198	14	3.6	14	81	8	57	56	0	6	38	1.24
135484--135564	36	2.2	36	95	0	144	18	23	14	43	1.87
135520--135930	105	3.9	105	82	5	447	22	18	17	40	1.91
144279--144330	22	2.3	23	83	6	70	34	17	19	28	1.94
149214--149584	71	5.2	71	79	2	379	34	27	20	17	1.95
149214--149594	141	2.7	137	77	8	379	34	28	19	17	1.95
149721--149825	35	3.0	35	94	0	174	32	4	6	56	1.46
153077--153106	8	3.8	8	95	0	51	40	13	16	30	1.87
153174--153221	20	2.4	20	85	0	69	37	31	12	18	1.88
155813--155842	15	2.0	15	100	0	60	26	13	26	33	1.93
158466--158583	54	2.2	55	85	1	157	33	10	20	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158712--159360	242	2.7	237	84	6	810	36	11	20	32	1.88
158712--159360	81	8.1	81	86	5	838	36	11	20	32	1.88

Tables:   1

The End!