Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006741.1 Hibiscus syriacus cultivar Beakdansim tig00016922_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80390

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2680--2768
28
3.1
28
87
9
110
31
2
7
58
1.39
5847--5882
18
2.0
18
94
0
63
22
19
33
25
1.97
5865--5921
28
2.0
28
83
6
71
19
21
29
29
1.97
8576--8621
23
2.0
24
82
4
58
47
6
0
45
1.28
8904--8945
20
2.2
20
87
12
61
40
4
7
47
1.52
9867--9961
44
2.1
44
81
13
104
25
18
25
30
1.98
13522--13608
35
2.5
34
78
12
88
55
9
6
28
1.57
14178--14235
27
2.1
27
83
0
71
22
18
43
15
1.88
16109--16199
30
3.0
30
82
3
103
19
18
26
35
1.95
18394--18441
16
2.9
16
84
9
69
66
0
0
33
0.92
18394--18441
9
5.7
9
83
11
66
66
0
0
33
0.92
19047--19087
17
2.4
17
88
8
57
26
7
14
51
1.69
19434--19856
77
5.5
76
84
2
515
37
17
9
35
1.82
19436--19856
153
2.7
152
85
2
558
37
16
9
35
1.82
19435--19869
230
1.9
230
85
1
595
37
17
9
35
1.82
19434--19906
77
6.1
77
82
4
490
36
17
10
35
1.84
20005--20094
40
2.2
40
82
3
92
42
13
4
40
1.64
20513--20555
21
2.0
21
86
4
59
39
0
0
60
0.97
31049--31084
18
2.0
18
100
0
72
44
0
33
22
1.53
32000--32038
19
2.1
19
100
0
78
43
20
25
10
1.83
38666--38694
3
9.7
3
100
0
58
0
34
0
65
0.93
39753--39805
18
2.9
18
91
0
88
20
20
32
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40631--41352
45
16.2
45
93
2
1179
31
24
6
37
1.81
40631--41352
89
8.1
89
95
0
1203
31
24
6
37
1.81
41449--42202
59
12.9
56
72
10
397
30
22
10
37
1.88
41542--42195
176
3.7
175
79
6
608
30
21
10
37
1.87
41542--42013
117
4.0
117
92
1
723
30
21
10
37
1.87
41542--42195
117
5.6
117
86
4
687
30
21
10
37
1.87
53975--54008
14
2.4
14
90
0
59
47
0
41
11
1.40
56453--56498
20
2.2
21
88
3
67
36
26
13
23
1.91
57598--57776
64
2.8
62
81
12
193
27
17
25
29
1.97
57619--57806
64
2.9
61
81
10
180
28
17
24
29
1.97
65186--65364
64
2.8
62
81
12
193
27
17
25
29
1.97
65207--65393
64
2.9
61
81
10
178
28
17
24
29
1.97
71999--72034
15
2.5
15
90
4
56
41
0
0
58
0.98
73508--73606
44
2.3
43
80
13
114
42
3
4
50
1.36
74825--74863
20
2.0
20
94
0
69
17
7
15
58
1.59
74826--74870
10
4.5
10
81
10
56
20
6
11
62
1.50
78012--78038
4
6.8
4
100
0
54
77
0
0
22
0.76
78119--78143
4
6.2
4
100
0
50
72
0
0
28
0.86
78162--78188
13
2.1
13
100
0
54
77
0
0
22
0.76
78213--78298
37
2.3
37
82
15
97
62
3
2
31
1.24
78288--78339
2
26.5
2
84
3
61
51
1
1
44
1.23
78294--78351
29
2.0
29
86
3
82
55
3
3
37
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78651--78712
30
2.1
30
84
3
81
29
17
8
45
1.77
79307--79463
78
2.1
74
79
7
163
26
19
22
31
1.98
79545--79646
36
2.8
36
85
4
125
44
14
18
22
1.86

Tables:   1

The End!