genome.fa.s6742.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006742.1 Hibiscus syriacus cultivar Beakdansim tig00016926_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76865

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3708--3746	11	3.5	11	89	0	60	84	0	15	0	0.62
3705--3740	13	2.7	13	91	4	54	86	0	13	0	0.58
4084--4119	18	2.0	18	100	0	72	33	5	5	55	1.46
4876--5431	83	6.7	83	94	0	943	27	12	23	36	1.91
6185--6943	225	3.4	224	96	2	1394	35	12	20	31	1.91
6185--6943	112	6.8	112	96	2	1376	35	12	20	31	1.91
6941--7203	111	2.3	110	87	7	359	38	11	19	31	1.87
7447--7501	3	18.7	3	92	3	94	32	1	0	65	1.03
7938--7982	21	2.1	21	88	8	65	68	6	24	0	1.13
7937--8002	19	3.3	19	77	10	53	66	9	24	0	1.20
7950--8010	20	3.1	19	80	7	59	63	13	22	0	1.28
8824--8898	34	2.2	35	80	7	82	26	2	9	61	1.40
8912--8958	14	3.5	13	80	13	51	40	2	2	55	1.24
14009--14052	20	2.2	20	100	0	88	31	18	9	40	1.81
14375--14571	59	3.5	54	86	7	197	22	15	24	37	1.93
14406--14585	59	3.1	59	93	0	297	24	16	23	35	1.95
17651--17680	13	2.3	13	94	0	51	20	43	23	13	1.86
20139--20254	24	4.8	24	86	6	155	24	16	18	40	1.91
20191--20264	24	3.1	24	84	3	87	22	14	18	43	1.87
22334--22454	59	2.1	59	95	0	215	24	13	23	38	1.90
24850--24887	18	2.2	18	90	4	60	21	10	5	63	1.46
28805--28834	15	2.0	15	93	0	51	56	0	36	6	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28968--29033	15	4.4	15	76	14	73	40	6	15	37	1.72
28968--29049	30	2.8	30	87	5	114	41	7	15	35	1.75
29032--29081	20	2.5	20	93	0	91	40	10	14	36	1.79
29248--29312	28	2.3	27	84	10	85	52	1	1	44	1.19
29247--29351	29	3.5	30	78	19	105	53	1	0	43	1.18
29278--29337	24	2.7	23	82	7	61	56	1	0	41	1.09
29365--29408	22	2.0	23	86	4	63	54	0	0	45	0.99
29369--29425	21	2.6	22	81	10	64	52	0	0	47	1.00
29305--29425	54	2.3	51	77	19	133	50	0	0	47	1.12
29618--29725	28	3.9	29	67	11	82	47	15	20	16	1.83
29614--29729	42	2.8	42	93	0	196	44	18	19	17	1.87
30066--30093	12	2.3	12	100	0	56	46	0	0	53	1.00
30080--30246	22	7.6	22	83	7	205	43	0	7	49	1.30
30077--30246	44	3.9	43	87	3	250	44	0	7	48	1.30
30077--30246	66	2.6	65	85	4	234	44	0	7	48	1.30
30271--30329	31	1.9	31	85	0	82	44	10	1	44	1.48
31202--31246	3	15.0	3	90	0	72	37	0	0	62	0.96
31244--31304	2	31.0	2	91	3	97	54	0	0	45	1.00
31724--31762	19	2.1	19	85	0	51	66	7	25	0	1.18
38268--38354	2	43.5	2	100	0	174	49	0	0	50	1.00
38662--38695	6	5.8	6	93	6	61	85	14	0	0	0.60
38662--38695	11	2.9	12	91	8	61	85	14	0	0	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38662--38694	17	1.9	17	100	0	66	84	15	0	0	0.61
43116--43215	50	2.0	50	86	3	139	33	15	24	28	1.95
44294--44870	76	7.6	76	93	0	985	23	19	21	34	1.96
44803--45090	46	6.2	46	91	3	434	23	22	19	34	1.96
44803--45090	96	3.1	92	88	4	434	23	22	19	34	1.96
44817--45090	142	1.9	142	93	0	467	23	23	18	33	1.97
45214--45258	3	15.0	3	85	0	63	35	0	0	64	0.94
48130--48158	12	2.3	13	94	5	51	68	0	0	31	0.89
48309--48349	5	9.0	5	80	20	54	78	0	0	21	0.76
48299--48369	13	5.5	13	83	12	92	76	1	2	19	0.99
48309--48349	18	2.3	18	100	0	82	78	0	0	21	0.76
48299--48415	26	4.3	25	75	15	92	74	1	3	20	1.05
48309--48369	18	3.2	18	88	6	68	75	1	1	21	0.98
49603--49925	38	8.9	36	73	18	199	46	8	4	41	1.53
49825--49897	30	2.4	30	100	0	146	52	6	4	36	1.48
49914--49957	23	1.9	23	85	0	61	52	4	9	34	1.54
50540--51025	84	5.9	83	81	6	556	24	19	25	29	1.98
50540--51025	165	2.9	165	87	2	643	24	19	25	29	1.98
51265--51856	94	6.0	94	84	9	772	22	17	25	34	1.95
51354--51976	106	6.1	106	81	10	751	22	17	24	35	1.95
51496--51651	43	3.4	43	71	13	150	21	18	25	34	1.96
51269--51961	200	3.5	200	93	0	1050	22	17	24	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51696--51851	43	3.4	43	71	13	141	21	17	25	36	1.94
51265--51856	294	2.0	290	86	8	815	22	17	25	34	1.95
56209--56243	18	1.9	18	94	0	61	80	2	0	17	0.84
57658--57698	10	4.2	10	84	6	57	70	0	2	26	0.99
57749--57802	24	2.2	25	83	6	65	48	12	3	35	1.60
57764--58061	38	8.1	36	76	16	242	44	8	4	41	1.55
57836--58060	74	3.1	71	84	9	267	44	8	4	43	1.53
57854--58084	110	2.1	108	81	9	263	44	9	3	42	1.55
58744--59214	84	5.7	83	79	6	517	25	20	24	29	1.99
58682--59202	84	6.3	81	78	7	485	26	20	23	29	1.99
58746--59214	165	2.8	163	83	3	598	25	20	24	29	1.99
62620--62778	65	2.4	65	95	0	282	35	22	22	19	1.96
63264--63302	6	6.5	6	100	0	78	53	0	0	46	1.00
63441--63498	13	4.5	13	81	14	66	75	3	1	18	1.03
63446--63543	18	4.9	19	70	22	76	73	3	2	21	1.07
63441--63570	26	4.8	26	71	19	81	72	3	4	20	1.16
63446--63483	8	4.5	8	87	12	58	78	0	0	21	0.74
64901--64938	18	2.1	18	95	0	67	63	0	2	34	1.09
64903--64943	10	4.3	10	84	12	59	60	0	2	36	1.10
65040--65147	35	3.0	36	77	16	125	46	5	4	43	1.47
65040--65172	36	3.9	34	79	15	125	45	5	4	44	1.46
65004--65210	38	5.8	36	76	17	152	44	7	4	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65108--65288	38	4.8	38	79	12	185	43	8	4	43	1.57
65108--65297	74	2.5	73	84	11	242	43	8	4	43	1.57
69991--70035	22	2.0	22	91	0	72	11	26	20	42	1.85
74517--74573	23	2.5	23	82	0	69	43	19	14	22	1.86

Tables:   1

The End!