genome.fa.s6744.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006744.1 Hibiscus syriacus cultivar Beakdansim tig00016937_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89317

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20--169	20	7.5	20	84	3	176	20	20	25	34	1.97
1--169	60	2.8	60	79	0	194	20	18	24	36	1.95
225--276	20	2.6	20	96	0	95	21	13	26	38	1.90
2107--2198	48	1.9	48	88	0	139	35	14	5	44	1.68
4463--5024	8	74.8	8	71	20	324	39	3	6	50	1.45
4479--5035	23	24.1	23	70	20	239	40	3	5	50	1.45
4461--5035	37	15.1	37	81	12	548	40	4	5	50	1.46
4461--5035	76	7.6	73	77	13	451	40	4	5	50	1.46
4455--5061	14	48.2	13	67	21	286	39	4	6	50	1.47
4908--5065	79	2.0	77	79	16	173	40	3	5	50	1.44
5517--5547	6	5.2	6	96	0	53	19	61	0	19	1.35
7274--7632	172	2.1	173	90	1	569	37	18	4	39	1.72
7875--7952	41	1.9	41	97	0	147	20	32	14	33	1.92
8105--8148	23	1.9	23	100	0	88	25	40	25	9	1.84
8224--8308	34	2.5	34	96	0	152	35	24	24	15	1.94
19541--19626	31	2.8	31	92	0	136	46	9	18	25	1.79
23520--23544	10	2.5	10	100	0	50	40	0	8	52	1.31
27272--27311	17	2.4	17	87	8	55	40	2	0	57	1.12
29615--29644	14	2.1	14	93	0	51	53	23	0	23	1.46
30659--30698	17	2.3	18	91	4	64	37	0	0	62	0.95
30726--30787	29	2.1	29	93	0	106	38	1	1	58	1.18
31340--31385	16	2.8	16	96	3	83	45	13	0	41	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48483--48532	24	2.1	24	85	3	66	42	6	22	30	1.77
59526--59559	15	2.1	17	89	10	54	29	0	2	67	1.05
59532--59595	27	2.3	29	84	7	89	37	0	0	62	0.95
59554--59593	18	2.2	19	86	4	55	37	0	0	62	0.95
59638--59683	16	2.9	16	80	6	58	60	0	2	36	1.09
63318--63474	21	7.8	20	72	7	84	38	24	17	19	1.92
63441--63665	20	11.2	20	84	3	240	36	24	19	19	1.95
64377--64423	24	2.0	24	87	8	69	25	14	21	38	1.92
64598--64622	12	2.1	12	100	0	50	72	0	28	0	0.86
66929--67164	33	6.8	34	80	14	229	46	17	21	14	1.84
66971--67158	52	3.6	52	96	0	331	47	16	21	14	1.82
66943--67164	71	3.2	71	79	12	228	46	17	20	15	1.84
66943--67164	19	12.7	19	76	18	241	46	17	20	15	1.84
67154--67270	53	2.2	53	98	1	227	13	23	17	44	1.85
67173--67270	19	5.4	19	84	13	143	14	22	17	45	1.84
67373--67409	14	2.6	14	91	0	65	45	21	0	32	1.52
69334--69431	19	5.4	19	76	15	91	45	27	15	11	1.80
69369--69446	32	2.4	32	89	2	111	47	25	16	10	1.78
69558--69641	19	4.7	19	80	14	106	44	22	22	10	1.84
69536--69641	52	2.0	52	96	0	194	45	20	23	10	1.82
69653--69709	14	3.7	14	72	20	51	10	22	22	43	1.84
69637--69726	33	2.7	33	92	0	144	10	21	25	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69667--69726	19	3.4	19	71	21	67	11	21	25	41	1.87
70025--70079	22	2.5	22	75	0	65	21	14	40	23	1.90
70226--70418	20	9.6	20	84	4	228	18	20	25	35	1.95
70405--70487	21	4.0	21	73	6	78	25	16	24	33	1.96
70385--70483	42	2.4	43	77	11	100	21	18	23	37	1.94
70803--70840	20	1.9	19	94	5	67	39	0	10	50	1.37
75429--75497	32	2.2	32	100	0	138	40	17	5	36	1.74
76560--76592	12	2.6	13	85	9	50	57	0	3	39	1.14
76541--76617	40	1.9	40	83	0	100	49	1	3	45	1.28
76851--76904	15	3.4	15	73	14	54	37	1	3	57	1.27
82181--82246	28	2.4	28	80	16	75	57	4	6	31	1.43

Tables:   1

The End!