Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006745.1 Hibiscus syriacus cultivar Beakdansim tig00016939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73106
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Found at i:3450 original size:31 final size:31
Alignment explanation
Indices: 3412--3534 Score: 140
Period size: 31 Copynumber: 4.0 Consensus size: 31
3402 TGGTCGAGGG
* *
3412 TTTACCTATGTTATTCGGGACATATGGACTA
1 TTTACCTATGTTCTTCGGAACATATGGACTA
* * *
3443 TTTACCTATGTTCTTCGGGACATATTGACTG
1 TTTACCTATGTTCTTCGGAACATATGGACTA
** *
3474 TTTACCTATGTTCTTCATAACATATGGATTGA
1 TTTACCTATGTTCTTCGGAACATATGGACT-A
* *
3506 -TTACCTAAGTTCTTCGGAACCTATGGACT
1 TTTACCTATGTTCTTCGGAACATATGGACT
3535 GGTCCTTCGG
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
31 77 1.00
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (31 bp):
TTTACCTATGTTCTTCGGAACATATGGACTA
Found at i:4328 original size:21 final size:21
Alignment explanation
Indices: 4302--4342 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
4292 CGAAAGTCAC
4302 TGTAGCAGTGCACCGATGCAT
1 TGTAGCAGTGCACCGATGCAT
*
4323 TGTAGCAGTGCATCGATGCA
1 TGTAGCAGTGCACCGATGCA
4343 CAATTTTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (21 bp):
TGTAGCAGTGCACCGATGCAT
Found at i:5139 original size:21 final size:21
Alignment explanation
Indices: 5113--5157 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
5103 GATTTATGGG
* *
5113 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
5134 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
5155 CAA
1 CAA
5158 ACGAACATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:5989 original size:31 final size:31
Alignment explanation
Indices: 5951--6075 Score: 189
Period size: 31 Copynumber: 4.0 Consensus size: 31
5941 AGGATCGAGG
5951 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
5982 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
6013 GTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* * * *
6044 GATTACATAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
6075 G
1 G
6076 GTCCTTCGGG
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
31 86 0.99
32 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:10078 original size:31 final size:31
Alignment explanation
Indices: 10040--10164 Score: 198
Period size: 31 Copynumber: 4.0 Consensus size: 31
10030 AGGGTCGAGG
10040 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
10071 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
10102 GTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* * *
10133 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
10164 G
1 G
10165 GTCCTTCGGG
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
31 87 0.99
32 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:14938 original size:19 final size:20
Alignment explanation
Indices: 14891--14941 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
14881 GAAACCCCTT
**
14891 TGAAAATACATGATTTTTTA
1 TGAAAATACATGATTTTAAA
14911 TGAAAATACATGA-TTTAAA
1 TGAAAATACATGATTTTAAA
*
14930 TGAAGATACATG
1 TGAAAATACATG
14942 CTCTTGGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.45, C:0.06, G:0.14, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:18661 original size:15 final size:14
Alignment explanation
Indices: 18637--18672 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
18627 GATGTAGGAG
*
18637 TCTTTTTCTTTTTT
1 TCTTTTTCTTTTTC
18651 TCTTCTTTCTTTTTC
1 TCTT-TTTCTTTTTC
18666 TCTTTTT
1 TCTTTTT
18673 GTTTCTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (14 bp):
TCTTTTTCTTTTTC
Found at i:18663 original size:21 final size:22
Alignment explanation
Indices: 18637--18684 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
18627 GATGTAGGAG
18637 TCTTTTTCT-TTTTT-TCTTCTT
1 TCTTTTTCTCTTTTTGT-TTCTT
18658 TCTTTTTCTCTTTTTGTTTCTT
1 TCTTTTTCTCTTTTTGTTTCTT
18680 T-TTTT
1 TCTTTT
18685 GCAGCACTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 13 0.52
22 11 0.44
23 1 0.04
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.81
Consensus pattern (22 bp):
TCTTTTTCTCTTTTTGTTTCTT
Found at i:29795 original size:14 final size:15
Alignment explanation
Indices: 29759--29799 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
29749 TGAACTGTGA
29759 AAAATGAATTACTGG
1 AAAATGAATTACTGG
**
29774 AATTTGAATT-CTGG
1 AAAATGAATTACTGG
29788 AAAATGAATTAC
1 AAAATGAATTAC
29800 ATTTCTGGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.44, C:0.07, G:0.17, T:0.32
Consensus pattern (15 bp):
AAAATGAATTACTGG
Found at i:30047 original size:20 final size:21
Alignment explanation
Indices: 29983--30047 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 21
29973 CATAAAACTT
29983 AATATTATTATTTTTAAAATATTA
1 AATATTATT-TTTTT--AATATTA
* * *
30007 AA-ATAATTTATTTATTATTA
1 AATATTATTTTTTTAATATTA
30027 AATATTATTTTTTTAAT-TTA
1 AATATTATTTTTTTAATATTA
30047 A
1 A
30048 TAAAAATATT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
20 12 0.35
21 11 0.32
22 4 0.12
23 5 0.15
24 2 0.06
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
AATATTATTTTTTTAATATTA
Found at i:30171 original size:23 final size:23
Alignment explanation
Indices: 30120--30171 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
30110 AAAGTAATTG
30120 TTTA-TATTATATTTTAAAAATA
1 TTTATTATTATATTTTAAAAATA
* * *
30142 TTAATTATTATATTTTAAATATT
1 TTTATTATTATATTTTAAAAATA
30165 TTTATTA
1 TTTATTA
30172 AAATATTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 3 0.12
23 22 0.88
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTATTATTATATTTTAAAAATA
Found at i:30177 original size:23 final size:23
Alignment explanation
Indices: 30128--30178 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
30118 TGTTTATATT
**
30128 ATATTTTAAAAATATTAATTATT
1 ATATTTTAAAAATATTAATTAAA
* * *
30151 ATATTTTAAATATTTTTATTAAA
1 ATATTTTAAAAATATTAATTAAA
30174 ATATT
1 ATATT
30179 ATTAGATTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
ATATTTTAAAAATATTAATTAAA
Found at i:30390 original size:25 final size:24
Alignment explanation
Indices: 30336--30392 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
30326 ATTATTTTTT
**
30336 ATAATATTAGAAATATATATTATT
1 ATAATATTAGAAATATATATTAAA
* * *
30360 AGAATATTAATAAATATATTTTAAA
1 ATAATATT-AGAAATATATATTAAA
30385 ATAATATT
1 ATAATATT
30393 TTGATTAAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 7 0.27
25 19 0.73
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (24 bp):
ATAATATTAGAAATATATATTAAA
Found at i:30686 original size:41 final size:41
Alignment explanation
Indices: 30591--30724 Score: 187
Period size: 41 Copynumber: 3.2 Consensus size: 41
30581 TTACTCCAAC
* * *
30591 CAAACACTGAAAAACATTTTTCGAAAAACGAATTACGTGAAA
1 CAAACAC-GGAAAACATTTTCCGAAAAACAAATTACGTGAAA
*
30633 CAAACAAGGGAAAACATTTTCCGAAAAACAAATTACGTGAAA
1 CAAAC-ACGGAAAACATTTTCCGAAAAACAAATTACGTGAAA
* * *
30675 TAAACACGGAAAAGATTTTCCGAAAAACAAATTGCGTGAAA
1 CAAACACGGAAAACATTTTCCGAAAAACAAATTACGTGAAA
30716 CAAACACGG
1 CAAACACGG
30725 GATTTCGAGA
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
41 41 0.50
42 40 0.49
43 1 0.01
ACGTcount: A:0.50, C:0.17, G:0.15, T:0.18
Consensus pattern (41 bp):
CAAACACGGAAAACATTTTCCGAAAAACAAATTACGTGAAA
Found at i:30737 original size:37 final size:38
Alignment explanation
Indices: 30608--30738 Score: 106
Period size: 41 Copynumber: 3.3 Consensus size: 38
30598 TGAAAAACAT
* * *
30608 TTTTC-GAAAAACGAATTACGTGAAACAAACAAGGGAAAACA
1 TTTTCAGAAAAACAAATTACGTGAAACAAAC-ACGG---AGA
* *
30649 TTTTCCGAAAAACAAATTACGTGAAATAAACACGGAAAAGA
1 TTTTCAGAAAAACAAATTACGTGAAACAAACACGG---AGA
* *
30690 TTTTCCGAAAAACAAATTGCGTGAAACAAACACGG-GA
1 TTTTCAGAAAAACAAATTACGTGAAACAAACACGGAGA
30727 -TTTCGAGAAAAA
1 TTTTC-AGAAAAA
30739 TCAATTCTAT
Statistics
Matches: 81, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
36 4 0.05
37 8 0.10
41 46 0.57
42 23 0.28
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (38 bp):
TTTTCAGAAAAACAAATTACGTGAAACAAACACGGAGA
Found at i:31613 original size:27 final size:27
Alignment explanation
Indices: 31582--31634 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
31572 CTCTCCATTT
*
31582 ACATTAGTCA-TCGAGCTAGTGCTTGAA
1 ACATTAGT-ATTCGAGCTAATGCTTGAA
*
31609 ACATTTGTATTCGAGCTAATGCTTGA
1 ACATTAGTATTCGAGCTAATGCTTGA
31635 GAGCAACGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (27 bp):
ACATTAGTATTCGAGCTAATGCTTGAA
Found at i:31843 original size:59 final size:59
Alignment explanation
Indices: 31772--31883 Score: 156
Period size: 59 Copynumber: 1.9 Consensus size: 59
31762 TAGTTATATT
* *
31772 ATCATTTTGTAACTTTTAATAG-TCG-GAAATTCAATAAAACAACATCCTATAATCGGGAG
1 ATCATTTTGTAACCTTTAATAGTTCGAG-AATTC-ACAAAACAACATCCTATAATCGGGAG
* *
31831 ATCATTTTGTAACCTTTAATAGTTCGAGACTTCACAAAGCAACATCCTATAAT
1 ATCATTTTGTAACCTTTAATAGTTCGAGAATTCACAAAACAACATCCTATAAT
31884 TAGAAACCAT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
59 39 0.83
60 7 0.15
61 1 0.02
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.33
Consensus pattern (59 bp):
ATCATTTTGTAACCTTTAATAGTTCGAGAATTCACAAAACAACATCCTATAATCGGGAG
Found at i:39410 original size:49 final size:51
Alignment explanation
Indices: 39327--39433 Score: 150
Period size: 49 Copynumber: 2.1 Consensus size: 51
39317 CACGTAGGGG
* *
39327 TATAGCGCGGATCAGGTACCGCACTATACTTTTACTCCT-A-ATAATTTTA
1 TATAGCGCGGATCAGGTACCACACTATACCTTTACTCCTGACATAATTTTA
39376 TATAGCGCGGGA-CAGGTACCACGAC-ATACCTTTACTCCTGACATAATTTTA
1 TATAGCGC-GGATCAGGTACCAC-ACTATACCTTTACTCCTGACATAATTTTA
39427 TATAGCG
1 TATAGCG
39434 AGGGGCATGT
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
49 30 0.58
50 6 0.12
51 16 0.31
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (51 bp):
TATAGCGCGGATCAGGTACCACACTATACCTTTACTCCTGACATAATTTTA
Found at i:39446 original size:51 final size:49
Alignment explanation
Indices: 39339--39446 Score: 137
Period size: 51 Copynumber: 2.2 Consensus size: 49
39329 TAGCGCGGAT
* * *
39339 CAGGTACCGC-ACTATACTTTTACTCCTAATAATTTTATATAGCGCGGGA
1 CAGGTACCACGAC-ATACCTTTACTCCTAATAATTTTATATAGCGAGGGA
*
39388 CAGGTACCACGACATACCTTTACTCCTGACATAATTTTATATAGCGAGGGG
1 CAGGTACCACGACATACCTTTACTCCT-A-ATAATTTTATATAGCGAGGGA
*
39439 CATGTACC
1 CAGGTACC
39447 GCGTTTTGTA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
49 22 0.43
50 3 0.06
51 26 0.51
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (49 bp):
CAGGTACCACGACATACCTTTACTCCTAATAATTTTATATAGCGAGGGA
Found at i:43088 original size:25 final size:25
Alignment explanation
Indices: 43036--43088 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
43026 ATTAAATGAG
*
43036 AAATAAAAAAAATTACAATTTAACA
1 AAATAAAAAAAATTACAATATAACA
* *
43061 AAATAAAATAAA-TACAAATATAATA
1 AAATAAAAAAAATTAC-AATATAACA
43086 AAA
1 AAA
43089 AACAAAATCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.23
Consensus pattern (25 bp):
AAATAAAAAAAATTACAATATAACA
Found at i:43222 original size:15 final size:15
Alignment explanation
Indices: 43204--43234 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
43194 TCATCATCAC
43204 CATCGTCGTCATCGT
1 CATCGTCGTCATCGT
*
43219 CATCGTTGTCATCGT
1 CATCGTCGTCATCGT
43234 C
1 C
43235 TTGCGCAGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.32, G:0.19, T:0.35
Consensus pattern (15 bp):
CATCGTCGTCATCGT
Found at i:43601 original size:18 final size:18
Alignment explanation
Indices: 43578--43615 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
43568 AGGCGATGGT
*
43578 GGCATCATATATGGTTGC
1 GGCATCATATATGGCTGC
43596 GGCATCATATATGGCTGC
1 GGCATCATATATGGCTGC
43614 GG
1 GG
43616 TGGCTGCTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (18 bp):
GGCATCATATATGGCTGC
Found at i:45296 original size:110 final size:111
Alignment explanation
Indices: 45119--45318 Score: 357
Period size: 110 Copynumber: 1.8 Consensus size: 111
45109 ATTCTTAATC
* * *
45119 TAATAATCATGCATTAAATGAATCAACTAATTATTAATAATAATTTAAATTAAATTAAAACGTTA
1 TAATAATAATGCATTAAATAAATCAACTAAATATTAATAATAATTTAAATTAAATTAAAACGTTA
45184 AAATGTTACCGTATCAGCAAAGTGTCGAGATATTTAATTATCAATA
66 AAATGTTACCGTATCAGCAAAGTGTCGAGATATTTAATTATCAATA
*
45230 TAATAATAATGCATTAAATAAAT-AACTAAATATTACTAATAATTTAAATTAAATTAAAACGTTA
1 TAATAATAATGCATTAAATAAATCAACTAAATATTAATAATAATTTAAATTAAATTAAAACGTTA
45294 AAATGTTACCGTATCAGCAAAGTGT
66 AAATGTTACCGTATCAGCAAAGTGT
45319 AGATATACAT
Statistics
Matches: 85, Mismatches: 4, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
110 64 0.75
111 21 0.25
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.34
Consensus pattern (111 bp):
TAATAATAATGCATTAAATAAATCAACTAAATATTAATAATAATTTAAATTAAATTAAAACGTTA
AAATGTTACCGTATCAGCAAAGTGTCGAGATATTTAATTATCAATA
Found at i:51204 original size:30 final size:30
Alignment explanation
Indices: 51170--51250 Score: 83
Period size: 31 Copynumber: 2.7 Consensus size: 30
51160 TTCCAGGATC
51170 AAATTGATATTTTATCTAAAT-TCAAAAATT
1 AAATTGATATTTTATCTAAATGT-AAAAATT
** **
51200 AAATTGACGTTTTATCTAAAATGTAAGGATT
1 AAATTGATATTTTATCT-AAATGTAAAAATT
* *
51231 AAAATAATATTTTATCTAAA
1 AAATTGATATTTTATCTAAA
51251 ATTTAGAGGT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
30 18 0.44
31 22 0.54
32 1 0.02
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (30 bp):
AAATTGATATTTTATCTAAATGTAAAAATT
Found at i:63178 original size:14 final size:16
Alignment explanation
Indices: 63159--63190 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
63149 GCCCTCTGTT
63159 CGAACATA-AAT-GAA
1 CGAACATATAATCGAA
63173 CGAACATATAATCGAA
1 CGAACATATAATCGAA
63189 CG
1 CG
63191 TTCACGAACG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 3 0.19
16 5 0.31
ACGTcount: A:0.50, C:0.19, G:0.16, T:0.16
Consensus pattern (16 bp):
CGAACATATAATCGAA
Found at i:68397 original size:37 final size:37
Alignment explanation
Indices: 68347--68427 Score: 162
Period size: 37 Copynumber: 2.2 Consensus size: 37
68337 CATCCCCTCC
68347 CCTCGTTAACTAGAGAAGAGAAATCCTTTCGACTCTT
1 CCTCGTTAACTAGAGAAGAGAAATCCTTTCGACTCTT
68384 CCTCGTTAACTAGAGAAGAGAAATCCTTTCGACTCTT
1 CCTCGTTAACTAGAGAAGAGAAATCCTTTCGACTCTT
68421 CCTCGTT
1 CCTCGTT
68428 TGTACTATCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (37 bp):
CCTCGTTAACTAGAGAAGAGAAATCCTTTCGACTCTT
Done.