genome.fa.s6746.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006746.1 Hibiscus syriacus cultivar Beakdansim tig00016946_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60442

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3059--3110	26	2.0	25	85	10	70	38	28	9	23	1.86
6013--6049	15	2.4	16	86	13	51	32	2	5	59	1.34
6512--6759	130	1.9	130	92	0	415	35	12	15	36	1.85
7152--7227	35	2.2	35	90	0	116	36	1	22	39	1.63
7829--7978	52	2.9	52	93	3	250	29	8	24	38	1.83
7961--8048	45	2.0	45	84	4	115	35	17	10	37	1.83
12411--12467	29	2.0	29	100	0	114	14	35	31	19	1.91
12526--12610	29	2.9	29	94	0	143	14	37	28	20	1.91
12615--12670	23	2.4	24	85	8	80	12	32	25	30	1.92
12665--12698	10	3.4	10	84	15	52	8	29	38	23	1.85
12689--12726	14	2.7	14	95	0	67	10	28	39	21	1.86
12769--12826	29	2.0	29	86	0	80	20	27	36	15	1.93
14888--15008	58	2.1	57	95	1	215	42	11	10	35	1.76
16977--17001	12	2.1	12	100	0	50	40	8	20	32	1.81
17521--17568	21	2.3	21	89	7	71	25	20	16	37	1.93
20720--20749	2	15.0	2	100	0	60	50	0	0	50	1.00
22349--22387	16	2.4	16	91	0	69	48	17	17	15	1.81
23333--23378	23	2.0	23	95	0	83	65	19	13	2	1.37
24388--24441	26	2.1	26	92	0	90	22	12	29	35	1.91
25995--26065	33	2.2	33	94	0	124	11	23	16	47	1.79
26145--26237	21	4.6	20	80	9	116	47	18	20	13	1.82
26145--26237	42	2.3	41	87	5	134	47	18	20	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26279--26325	24	2.0	24	87	8	69	38	21	14	25	1.92
27018--27246	20	11.4	20	87	1	244	19	17	25	37	1.94
27240--27310	21	3.4	20	75	13	54	25	18	22	33	1.96
32071--32233	64	2.5	64	96	2	292	33	20	21	23	1.97
32867--32919	26	2.2	24	83	10	63	28	26	16	28	1.97
35498--35578	34	2.4	34	87	6	112	40	35	11	12	1.78
35571--35640	34	2.1	34	89	2	106	28	31	12	27	1.93
37534--37596	25	2.5	24	74	23	58	42	7	1	47	1.42
39539--39589	23	2.2	24	85	3	68	35	0	0	64	0.94
39801--39892	48	1.9	48	88	0	139	33	14	7	44	1.73
42133--42571	8	58.8	8	71	20	256	39	3	6	50	1.46
42149--42515	23	15.6	23	73	17	231	39	4	6	49	1.48
42184--42484	37	7.8	37	85	10	399	39	4	6	49	1.49
42319--42582	84	3.3	77	91	6	381	40	4	5	50	1.45
42141--42571	23	18.7	23	71	17	206	39	3	6	50	1.46
42125--42613	14	37.6	13	69	19	244	39	4	6	49	1.48
43071--43101	6	5.2	6	96	0	53	19	61	0	19	1.35
44837--45195	172	2.1	173	91	1	578	37	18	5	39	1.73
45438--45515	41	1.9	41	97	0	147	20	32	14	33	1.92
45670--45713	23	1.9	23	100	0	88	25	40	25	9	1.84
45789--45873	34	2.5	34	96	0	152	35	24	24	15	1.94
52464--52490	3	9.0	3	100	0	54	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57817--57902	31	2.8	31	94	0	145	46	8	18	26	1.77

Tables:   1

The End!