Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006747.1 Hibiscus syriacus cultivar Beakdansim tig00016971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108124

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8287--8329
21
2.0
21
90
0
68
32
27
23
16
1.96
8979--9023
23
2.0
23
86
0
63
20
26
26
26
1.99
15031--15070
20
2.0
20
90
0
62
32
30
20
17
1.95
15426--15465
14
2.7
15
88
3
64
45
10
12
32
1.75
15758--15802
23
2.0
23
86
8
65
20
24
26
28
1.99
20976--21004
3
9.7
3
100
0
58
34
0
0
65
0.93
23355--23391
2
19.0
2
94
5
67
51
0
0
48
1.00
24087--24479
158
2.5
154
86
4
520
28
18
6
46
1.74
30439--30468
16
1.9
16
93
6
53
80
3
3
13
0.97
30576--30618
18
2.4
18
92
0
68
72
0
6
20
1.08
37055--37114
30
2.0
30
83
3
77
15
11
13
60
1.60
37515--37555
20
2.1
19
86
4
55
34
9
4
51
1.56
38912--39217
154
2.0
155
92
1
508
42
11
9
36
1.73
44836--44876
2
20.5
2
100
0
82
51
0
0
48
1.00
51955--51992
15
2.4
16
82
13
51
28
13
0
57
1.36
68798--69169
189
2.0
184
89
3
575
37
17
18
26
1.92
75745--75872
46
2.8
46
78
3
141
38
22
16
22
1.93
92763--92826
20
3.2
20
82
12
69
26
25
9
39
1.86
96425--96473
17
3.1
16
80
8
55
6
34
0
59
1.22
99607--99633
2
13.5
2
100
0
54
51
0
0
48
1.00
101476--102163
346
2.0
346
82
4
848
39
10
10
39
1.74
102218--102249
3
10.7
3
100
0
64
31
0
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102764--102803
15
2.5
17
84
15
59
35
0
5
60
1.19
106559--106594
18
2.0
18
88
0
54
25
27
27
19
1.99

Tables:   1

The End!