Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006748.1 Hibiscus syriacus cultivar Beakdansim tig00016974_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64731

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2922--3010
32
2.8
32
81
5
108
15
25
28
30
1.96
6897--6939
18
2.4
18
92
0
68
13
32
4
48
1.63
12063--12100
20
1.9
20
88
0
58
18
18
26
36
1.94
12607--12631
12
2.1
12
100
0
50
36
16
24
24
1.94
16110--16144
17
2.1
17
94
0
61
34
22
8
34
1.85
28972--29005
15
2.2
16
89
5
52
76
5
0
17
0.98
30451--30495
14
3.2
14
80
0
54
2
17
4
75
1.07
30831--30954
25
5.0
25
96
1
214
32
15
19
33
1.93
31084--31147
3
22.0
3
78
12
71
67
1
3
28
1.15
31086--31149
32
2.0
32
90
6
103
65
3
4
26
1.27
33098--33127
14
2.1
15
93
6
53
63
6
6
23
1.43
32781--33372
290
2.1
285
81
8
666
46
5
13
33
1.66
33789--33833
16
2.8
16
83
6
56
35
17
11
35
1.86
33843--34165
4
81.5
4
74
13
141
44
23
4
27
1.73
33898--34721
28
29.2
28
66
11
122
46
23
4
25
1.71
33847--34022
57
2.9
58
84
8
219
45
22
5
27
1.73
34123--34155
2
16.5
2
100
0
66
51
0
0
48
1.00
34203--34423
8
27.6
8
68
9
67
48
25
2
23
1.64
34191--34231
12
3.2
12
87
12
64
48
31
0
19
1.49
34190--34421
26
9.2
24
72
15
96
48
25
2
23
1.63
34237--34499
16
15.9
16
68
17
74
49
24
2
22
1.62
34141--34339
52
3.8
51
71
12
129
47
22
3
26
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34465--34531
4
17.2
4
75
17
52
46
29
4
19
1.69
34537--34576
16
2.5
16
95
0
71
35
17
15
32
1.91
34531--34582
16
2.8
19
75
22
56
34
15
15
34
1.89
34566--34711
16
8.8
16
72
8
85
47
17
3
32
1.64
34590--34769
4
47.0
4
73
8
79
49
25
1
23
1.59
34593--34713
22
5.5
22
74
5
84
48
19
2
29
1.61
34587--34664
38
2.1
38
87
0
111
48
20
2
28
1.62
34598--34709
30
3.7
30
76
0
107
48
19
2
29
1.63
34613--34743
14
9.1
14
78
5
91
48
25
2
24
1.63
34711--34755
2
22.5
2
90
0
72
51
44
0
4
1.21
34713--34809
12
7.9
12
80
2
59
57
30
2
9
1.41
34886--35019
2
67.0
2
100
0
268
50
50
0
0
1.00
35026--35060
4
8.8
4
100
0
70
25
48
25
0
1.51
35278--35325
19
2.5
20
90
6
73
29
10
4
56
1.52
36842--36888
10
4.7
10
82
7
60
12
25
27
34
1.92
36841--36888
20
2.4
20
86
10
71
14
25
27
33
1.94
36907--36957
17
3.2
17
86
10
72
19
50
19
9
1.75
44116--44169
9
5.8
9
76
8
54
18
25
25
29
1.98
44116--44173
19
3.1
18
82
9
64
18
25
25
29
1.98

Tables:   1

The End!