Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000675.1 Hibiscus syriacus cultivar Beakdansim tig00001309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124509
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Found at i:7468 original size:273 final size:276
Alignment explanation
Indices: 6850--7673 Score: 1606
Period size: 273 Copynumber: 3.0 Consensus size: 276
6840 TACGGTGAAG
6850 ATGGTACATCTGGAAAAACAACAATTTATAACAGTTATAAAATCTATCATGGAATAATTTATAAC
1 ATGGTACATCTGGAAAAACAACAATTTATAACAGTTATAAAATCTATCATGGAATAATTTATAAC
6915 ATAATTATAATATTTTTAAAATTTGATGATTAATATAAAATGTTGACGAATGATGTAATTAATTT
66 ATAATTATAATATTTTTAAAATTTGATGATTAATATAAAATGTTGACGAATGATGTAATTAATTT
6980 TTGGGTAAACTACATGTTTAATACCTAAACTTATTTCGTTTTAGTACCTAACTTTTCATTTGTTT
131 TTGGGTAAACTACATGTTTAATACCTAAACTTATTTCGTTTTAGTACCTAACTTTTCATTTGTTT
7045 CAAAATCATACTTAACGTTTATTTTTTATTTTATTTTAGTACCTCGCCCTTATAAACTTAACAAA
196 CAAAATCATACTTAACGTTTATTTTTTATTTTATTTTAGTACCTCGCCCTTATAAACTTAACAAA
7110 ATTCCCTTTTTTATGC
261 ATTCCCTTTTTTATGC
7126 ATGGTACATCTGGAAAAACAACAATTTATAACAGTTATAAAATCTATCATGGAATAATTTATAAC
1 ATGGTACATCTGGAAAAACAACAATTTATAACAGTTATAAAATCTATCATGGAATAATTTATAAC
7191 ATAATTATAATATTTTTAAAATTTGATGATTAATATAAAATGTTGACGAATGATGTAATTAATTT
66 ATAATTATAATATTTTTAAAATTTGATGATTAATATAAAATGTTGACGAATGATGTAATTAATTT
7256 TTGGGTAAACTACATGTTTAATACCT-AACTTATTTCGTTTTAGTACCTAAC-TTTC-TTTGTTT
131 TTGGGTAAACTACATGTTTAATACCTAAACTTATTTCGTTTTAGTACCTAACTTTTCATTTGTTT
7318 CAAAATCATACTTAACGTTTATTTTTTATTTTATTTTAGTACCTCGCCCTTATAAACTTAACAAA
196 CAAAATCATACTTAACGTTTATTTTTTATTTTATTTTAGTACCTCGCCCTTATAAACTTAACAAA
7383 ATTCCCTTTTTTATGC
261 ATTCCCTTTTTTATGC
7399 ATGGTACATCTGGAAAAACAACAATTTATAACAGTTATAAAATCTATCATGGAATAATTTATAAC
1 ATGGTACATCTGGAAAAACAACAATTTATAACAGTTATAAAATCTATCATGGAATAATTTATAAC
7464 ATAATTATAATATTTTTAAAATTTGATGATTAATATAAAATGTTGACGAATGATGTAATTAA-TT
66 ATAATTATAATATTTTTAAAATTTGATGATTAATATAAAATGTTGACGAATGATGTAATTAATTT
7528 TTGGGTAAACTACATG-TTAATACCTAAACTTATTT-GTTTTAGTACCTAACTTTTCATTTGTTT
131 TTGGGTAAACTACATGTTTAATACCTAAACTTATTTCGTTTTAGTACCTAACTTTTCATTTGTTT
7591 CAAAATCATACTTAACGTTTATTTTTTATTTTATTTTAGTACCTCGCCCTTATAAACTTAACAAA
196 CAAAATCATACTTAACGTTTATTTTTTATTTTATTTTAGTACCTCGCCCTTATAAACTTAACAAA
7656 ATTCCCTTTTTTATGC
261 ATTCCCTTTTTTATGC
7672 AT
1 AT
7674 AATTTATATG
Statistics
Matches: 545, Mismatches: 0, Indels: 9
0.98 0.00 0.02
Matches are distributed among these distances:
271 24 0.04
272 31 0.06
273 305 0.56
274 4 0.01
275 25 0.05
276 156 0.29
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (276 bp):
ATGGTACATCTGGAAAAACAACAATTTATAACAGTTATAAAATCTATCATGGAATAATTTATAAC
ATAATTATAATATTTTTAAAATTTGATGATTAATATAAAATGTTGACGAATGATGTAATTAATTT
TTGGGTAAACTACATGTTTAATACCTAAACTTATTTCGTTTTAGTACCTAACTTTTCATTTGTTT
CAAAATCATACTTAACGTTTATTTTTTATTTTATTTTAGTACCTCGCCCTTATAAACTTAACAAA
ATTCCCTTTTTTATGC
Found at i:7887 original size:15 final size:17
Alignment explanation
Indices: 7861--7910 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 17
7851 TATAATTGAA
7861 AGTTAGAGTAATTAAATT
1 AGTTA-AGTAATTAAATT
7879 A-TT-AGTAATTTAAA--
1 AGTTAAGTAA-TTAAATT
7893 AGTTAAGTAATTAAATT
1 AGTTAAGTAATTAAATT
7910 A
1 A
7911 AAAAAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 11
0.71 0.00 0.29
Matches are distributed among these distances:
14 1 0.04
15 12 0.44
16 10 0.37
17 3 0.11
18 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (17 bp):
AGTTAAGTAATTAAATT
Found at i:9058 original size:2 final size:2
Alignment explanation
Indices: 9051--9090 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
9041 CTTATTTTTA
9051 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9091 CGTTTGTAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10547 original size:78 final size:77
Alignment explanation
Indices: 10457--10608 Score: 216
Period size: 78 Copynumber: 1.9 Consensus size: 77
10447 AATTTAATAC
* * * *
10457 TTGTGTACGTTTATTTATTTATGAAGATGTTTATGTTCGTTTGTTTAGCATTCGT-GCATGTTCG
1 TTGTGTACGTTTAATTATTTATAAAGAGGTTCATGTTCGTTTGTTTAGCA-TC-TAGCATGTTCG
10521 TTTAACATTCGTAT
64 TTTAACATTCGTAT
* *
10535 TTGTGTACGTTTAATTATTTCTAAAGGGGTTCATGTTCGTTTGTTTAGCATCTACGCATGTTCGT
1 TTGTGTACGTTTAATTATTTATAAAGAGGTTCATGTTCGTTTGTTTAGCATCTA-GCATGTTCGT
10600 TTAACATTC
65 TTAACATTC
10609 AAGAACATGT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
76 1 0.02
77 2 0.03
78 63 0.95
ACGTcount: A:0.20, C:0.12, G:0.19, T:0.49
Consensus pattern (77 bp):
TTGTGTACGTTTAATTATTTATAAAGAGGTTCATGTTCGTTTGTTTAGCATCTAGCATGTTCGTT
TAACATTCGTAT
Found at i:14006 original size:39 final size:39
Alignment explanation
Indices: 13958--14032 Score: 96
Period size: 39 Copynumber: 1.9 Consensus size: 39
13948 ATTATTCCAT
* **
13958 AATTTCTTTTGTTATTATTTTTCTTTCTATTCTTTTAAC
1 AATTACTTTTGTTATTAAATTTCTTTCTATTCTTTTAAC
* * *
13997 AATTACTTTTTTTTTTAAATTTCTTTCTATTTTTTT
1 AATTACTTTTGTTATTAAATTTCTTTCTATTCTTTT
14033 GACGTTTGAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 30 1.00
ACGTcount: A:0.19, C:0.11, G:0.01, T:0.69
Consensus pattern (39 bp):
AATTACTTTTGTTATTAAATTTCTTTCTATTCTTTTAAC
Found at i:14720 original size:33 final size:33
Alignment explanation
Indices: 14678--14808 Score: 127
Period size: 33 Copynumber: 4.2 Consensus size: 33
14668 TGGTGCCCAA
14678 GGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGT
1 GGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGT
* *
14711 GGTGCAGGAGTTAGAGCCCAAGGTCCGGTTGGT
1 GGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGT
* * ***
14744 GTTGCA-G-G-T--A-CCGAAGG-T--GTCCAT
1 GGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGT
14768 GGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGT
1 GGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGT
*
14801 GTTGCAGG
1 GGTGCAGG
14809 TACCGAAGGT
Statistics
Matches: 75, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
24 8 0.11
25 1 0.01
26 1 0.01
27 7 0.09
28 1 0.01
29 1 0.01
30 7 0.09
31 2 0.03
32 1 0.01
33 46 0.61
ACGTcount: A:0.17, C:0.17, G:0.43, T:0.24
Consensus pattern (33 bp):
GGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGT
Found at i:14776 original size:57 final size:57
Alignment explanation
Indices: 14710--15306 Score: 935
Period size: 57 Copynumber: 10.5 Consensus size: 57
14700 GTTCGGTTGG
* *
14710 TGGTGCAGGAGTTAGAGCCCAAGGTCCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
14767 TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
* * * *
14824 TGGTGCAGGAGTTGGAGCCCAAGGTTCAGTTGGCT-TTACTGGTACTGAAGGTGTCCA
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGG-TGTTGCAGGTACCGAAGGTGTCCA
* *
14881 TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTAGGTGTTGCAGGTATCGAAGGTGTCCA
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
* * * *
14938 TGGTGCAGGGGCTGGAGTCCAAAGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
* ** *
14995 TGGTGCAGGCGCCGGAGCCCAAGGTTCGGTTGGTGTTGCTGGTACCGAAGGTGTCCA
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
* *
15052 TGGTGCAGGAGTTGGAGCCCAAGGTTCCGTTGGTGTTGCAGGTACAGAAGGTGTCCA
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
* **
15109 TGGTGCAGGCGCCGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
15166 TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
* *
15223 TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGCTGTTGCAGGTATCGAAGGTGTCCA
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
* ** *
15280 TGGTGCAGGCGCGGGAGTCCAAGGTTC
1 TGGTGCAGGAGTTGGAGCCCAAGGTTC
15307 AACTGGTGAT
Statistics
Matches: 495, Mismatches: 43, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
56 1 0.00
57 493 1.00
58 1 0.00
ACGTcount: A:0.18, C:0.19, G:0.40, T:0.24
Consensus pattern (57 bp):
TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
Found at i:15347 original size:114 final size:112
Alignment explanation
Indices: 14710--15381 Score: 812
Period size: 114 Copynumber: 5.9 Consensus size: 112
14700 GTTCGGTTGG
* * * *
14710 TGGTGCAGGAGTTAGAGCCCAAGGTCCGGTTGGTGTTGCAGGTACCGAAGGTGTCCATGGTGCAG
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCAGTTGGTGTTGCAGGTAAC--AGGTGTCCATGGTGCAG
14775 GAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
64 GAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
* *
14824 TGGTGCAGGAGTTGGAGCCCAAGGTTCAGTTGGCT-TTACTGGT-ACTGAAGGTGTCCATGGTGC
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCAGTTGG-TGTTGCAGGTAAC---AGGTGTCCATGGTGC
* *
14887 AGGAGTTGGAGCCCAAGGTTCGGTAGGTGTTGCAGGTATCGAAGGTGTCCA
62 AGGAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
* * * * * *
14938 TGGTGCAGGGGCTGGAGTCCAAAGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCATGGTGCAG
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCAGTTGGTGTTGCAGGTAAC--AGGTGTCCATGGTGCAG
* ** *
15003 GCGCCGGAGCCCAAGGTTCGGTTGGTGTTGCTGGTACCGAAGGTGTCCA
64 GAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
* *
15052 TGGTGCAGGAGTTGGAGCCCAAGGTTCCGTTGGTGTTGCAGGTACAGAAGGTGTCCATGGTGCAG
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCAGTTGGTGTTGCAGGTA-A-CAGGTGTCCATGGTGCAG
* **
15117 GCGCCGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
64 GAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
* *
15166 TGGTGCAGGAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCATGGTGCAG
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCAGTTGGTGTTGCAGGTAAC--AGGTGTCCATGGTGCAG
* *
15231 GAGTTGGAGCCCAAGGTTCGGTTGCTGTTGCAGGTATCGAAGGTGTCCA
64 GAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
* ** * ** * * * * **
15280 TGGTGCAGGCGCGGGAGTCCAAGGTTCAACTGGTGATCT-CGGTGTAACTGGT-TCCCACGATAT
1 TGGTGCAGGAGTTGGAGCCCAAGGTTCAGTTGGTG-T-TGCAG-GTAACAGGTGT-CCATGGTGC
*
15343 AGGAGTTGGAGCCCAAGGTTCAGTTGGTGTTGCAGGTAC
62 AGGAGTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTAC
15382 TGTCCATGGT
Statistics
Matches: 491, Mismatches: 55, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
113 3 0.01
114 478 0.97
115 5 0.01
116 5 0.01
ACGTcount: A:0.18, C:0.19, G:0.39, T:0.25
Consensus pattern (112 bp):
TGGTGCAGGAGTTGGAGCCCAAGGTTCAGTTGGTGTTGCAGGTAACAGGTGTCCATGGTGCAGGA
GTTGGAGCCCAAGGTTCGGTTGGTGTTGCAGGTACCGAAGGTGTCCA
Found at i:24390 original size:22 final size:22
Alignment explanation
Indices: 24365--24407 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
24355 ATCAAAGAAA
* *
24365 ACAAACATGCTTTATTCCAAGT
1 ACAAACATCCTTTAATCCAAGT
*
24387 ACAAAGATCCTTTAATCCAAG
1 ACAAACATCCTTTAATCCAAG
24408 CCTACCCTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (22 bp):
ACAAACATCCTTTAATCCAAGT
Found at i:25902 original size:8 final size:8
Alignment explanation
Indices: 25889--25921 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
25879 AACCACAAAC
25889 CTAAATAT
1 CTAAATAT
25897 CTAAATAT
1 CTAAATAT
*
25905 CTAAATCT
1 CTAAATAT
25913 CTAAA-AT
1 CTAAATAT
25920 CT
1 CT
25922 CCCATGCACC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
7 3 0.13
8 20 0.87
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (8 bp):
CTAAATAT
Found at i:39008 original size:18 final size:19
Alignment explanation
Indices: 38968--39010 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
38958 AAATTTAGAA
*
38968 TAAAAATCAATATAAATTC
1 TAAAATTCAATATAAATTC
38987 TAAAATTCAATA-AACATT-
1 TAAAATTCAATATAA-ATTC
39005 TAAAAT
1 TAAAAT
39011 GGTTTAGCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAAATTCAATATAAATTC
Found at i:47351 original size:55 final size:55
Alignment explanation
Indices: 47286--47729 Score: 499
Period size: 55 Copynumber: 8.1 Consensus size: 55
47276 TGATAAGTCT
* * *
47286 GCTCCTTATTCCTTCAGGGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCT
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCC
* * * *
47341 GCTCCCTATTCATTCAGGGAGTATAAGACTCGAACAATCTTCAGCAAACGTGTCT
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCC
* * * * *
47396 GCTCCCTATTCGTTCAGGGAGTATAAGACTCGAACAATCTTCAATAAAACGGGCCC
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAA-CAAACGTGTCC
* * ** *
47452 GCTCTCTATTCCTTCAGAGTGTAT-AGAACTCGAACAATCTTCAACAAATATGTCT
1 GCTCCCTATTCCTTCAGAGAGTATAAG-ACTCGAACAATCTTCAACAAACGTGTCC
* * *
47507 GCTCCCTATTTCTTCAGAGAGTATAGGACTTG----ATCTTCAACAAACGTGTCC
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCC
* * * * *
47558 GCTCCCTATTTCTTCAGAGAGTATAGGACTCGAACAATCTTTATA-AAACGGGGCC
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCA-ACAAACGTGTCC
* * *
47613 GCTCTCTATTCCTTCAGAGAGTAT-AGAACTCGAACAAACTTCAACAAACGGGTCC
1 GCTCCCTATTCCTTCAGAGAGTATAAG-ACTCGAACAATCTTCAACAAACGTGTCC
* * * *
47668 GCTCTCTATTCCTTCATAGAGTAT-AGAACTCGAACAATCTTCAACAAACGGGTTC
1 GCTCCCTATTCCTTCAGAGAGTATAAG-ACTCGAACAATCTTCAACAAACGTGTCC
47723 GCTCCCT
1 GCTCCCT
47730 CTTTCTCTAA
Statistics
Matches: 338, Mismatches: 41, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
51 47 0.14
54 2 0.01
55 243 0.72
56 46 0.14
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (55 bp):
GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGTGTCC
Found at i:47646 original size:217 final size:216
Alignment explanation
Indices: 47322--47715 Score: 594
Period size: 217 Copynumber: 1.8 Consensus size: 216
47312 GACTCGAACA
* * *
47322 ATCTTCAACAAACGTGTCTGCTCCCTATTCATTCAGGGAGTATAAGACTCGAACAATCTTCAGCA
1 ATCTTCAACAAACGTGTCCGCTCCCTATTCATTCAGAGAGTATAAGACTCGAACAATCTTCAGAA
* * * * * *
47387 AACGTGTCTGCTCCCTATTCGTTCAGGGAGTATAAGACTCGAACAATCTTCAATAAAACGGGCCC
66 AACGGGGCCGCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAAACTTCAA-AAAACGGGCCC
*
47452 GCTCTCTATTCCTTCAGAGTGTATAGAACTCGAACAATCTTCAACAAATATGTCTGCTCCCTATT
130 GCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAATATGTCTGCTCCCTATT
47517 TCTTCAGAGAGTATAGGACTTG
195 TCTTCAGAGAGTATAGGACTTG
* * *
47539 ATCTTCAACAAACGTGTCCGCTCCCTATTTC-TTCAGAGAGTATAGGACTCGAACAATCTTTATA
1 ATCTTCAACAAACGTGTCCGCTCCCTA-TTCATTCAGAGAGTATAAGACTCGAACAATCTTCAGA
* * *
47603 AAACGGGGCCGCTCTCTATTCCTTCAGAGAGTAT-AGAACTCGAACAAACTTCAACAAACGGGTC
65 AAACGGGGCCGCTCCCTATTCCTTCAGAGAGTATAAG-ACTCGAACAAACTTCAAAAAACGGGCC
*
47667 CGCTCTCTATTCCTTCATAGAGTATAGAACTCGAACAATCTTCAACAAA
129 CGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAA
47716 CGGGTTCGCT
Statistics
Matches: 158, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
216 57 0.36
217 98 0.62
218 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (216 bp):
ATCTTCAACAAACGTGTCCGCTCCCTATTCATTCAGAGAGTATAAGACTCGAACAATCTTCAGAA
AACGGGGCCGCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAAACTTCAAAAAACGGGCCCG
CTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAATATGTCTGCTCCCTATTT
CTTCAGAGAGTATAGGACTTG
Found at i:47745 original size:55 final size:54
Alignment explanation
Indices: 47303--47866 Score: 370
Period size: 55 Copynumber: 10.4 Consensus size: 54
47293 ATTCCTTCAG
* *
47303 GGAGTATA-AGACTCGAACAATCTTCAACAAACGTG-TCTGCTCCCTA-TTCATTCAG
1 GGAGTATAGA-ACTCGAACAATCTTCAACAAACGGGTTC-GCTCCCTATTTC-TT-AA
* * *
47358 GGAGTATA-AGACTCGAACAATCTTCAGCAAACGTG-TCTGCTCCCTA-TTCGTTCAG
1 GGAGTATAGA-ACTCGAACAATCTTCAACAAACGGGTTC-GCTCCCTATTTC-TT-AA
* ** * * *
47413 GGAGTATA-AGACTCGAACAATCTTCAATAAAACGGGCCCGCTCTCTATTCCTTCA
1 GGAGTATAGA-ACTCGAACAATCTTCAA-CAAACGGGTTCGCTCCCTATTTCTTAA
* *** *
47468 GAGTGTATAGAACTCGAACAATCTTCAACAAATATG-TCTGCTCCCTATTTCTTCA
1 G-GAGTATAGAACTCGAACAATCTTCAACAAACGGGTTC-GCTCCCTATTTCTTAA
* * * * *
47523 GAGAGTATAGGACTTG----ATCTTCAACAAACGTGTCCGCTCCCTATTTCTTCA
1 G-GAGTATAGAACTCGAACAATCTTCAACAAACGGGTTCGCTCCCTATTTCTTAA
* * ** * * *
47574 GAGAGTATAGGACTCGAACAATCTTTATA-AAACGGGGCCGCTCTCTATTCCTTCA
1 G-GAGTATAGAACTCGAACAATCTTCA-ACAAACGGGTTCGCTCCCTATTTCTTAA
* * * *
47629 GAGAGTATAGAACTCGAACAAACTTCAACAAACGGGTCCGCTCTCTATTCCTTCATA
1 G-GAGTATAGAACTCGAACAATCTTCAACAAACGGGTTCGCTCCCTATTTCTT-A-A
*
47686 -GAGTATAGAACTCGAACAATCTTCAACAAACGGGTTCGCTCCCTCTTTCTCTAA
1 GGAGTATAGAACTCGAACAATCTTCAACAAACGGGTTCGCTCCCTATTTCT-TAA
* ** ** * *
47740 GGAGTATGGAACTCGAAC-ATCTTCTTCTTACGGGTTCGCTCCCTCTTTCTCTAG
1 GGAGTATAGAACTCGAACAATCTTCAACAAACGGGTTCGCTCCCTATTTCT-TAA
* * ** ** * * *
47794 GGAGTATGGAACTCGAAC-ATTTTCTTCTTACAGGTTCGCTCCCTCTTTCTCTAG
1 GGAGTATAGAACTCGAACAATCTTCAACAAACGGGTTCGCTCCCTATTTCT-TAA
47848 GGAGTAT-GAAACTCGAACA
1 GGAGTATAG-AACTCGAACA
47867 TTTTCTTCTG
Statistics
Matches: 442, Mismatches: 48, Indels: 38
0.84 0.09 0.07
Matches are distributed among these distances:
51 45 0.10
52 1 0.00
53 1 0.00
54 102 0.23
55 248 0.56
56 40 0.09
57 5 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (54 bp):
GGAGTATAGAACTCGAACAATCTTCAACAAACGGGTTCGCTCCCTATTTCTTAA
Found at i:47745 original size:110 final size:108
Alignment explanation
Indices: 47303--47812 Score: 457
Period size: 110 Copynumber: 4.7 Consensus size: 108
47293 ATTCCTTCAG
* * * *
47303 GGAGTATA-AGACTCGAACAATCTTCAACAAACGTGTCTGCTCCCTATTCATTCAGGGAGTATA-
1 GGAGTATAGA-ACTCGAACAATCTTCAACAAACGGGTCCGCTCCCTATTCCTTCAGAGAGTATAG
* * *
47366 AGACTCGAACAATCTTCAGCAAACGTGTCTGCTCCCTA-TTCGTTCAG
65 A-ACTCGAACAATCTTCAACAAACGGGTC-GCTCCCTATTTC-TT-AA
* * * *
47413 GGAGTATA-AGACTCGAACAATCTTCAATAAAACGGGCCCGCTCTCTATTCCTTCAGAGTGTATA
1 GGAGTATAGA-ACTCGAACAATCTTCAA-CAAACGGGTCCGCTCCCTATTCCTTCAGAGAGTATA
*** *
47477 GAACTCGAACAATCTTCAACAAATATGTCTGCTCCCTATTTCTTCA
64 GAACTCGAACAATCTTCAACAAACGGGTC-GCTCCCTATTTCTTAA
* * * *
47523 GAGAGTATAGGACTTG----ATCTTCAACAAACGTGTCCGCTCCCTATTTCTTCAGAGAGTATAG
1 G-GAGTATAGAACTCGAACAATCTTCAACAAACGGGTCCGCTCCCTATTCCTTCAGAGAGTATAG
* * * * * *
47584 GACTCGAACAATCTTTATA-AAACGGGGCCGCTCTCTATTCCTTCA
65 AACTCGAACAATCTTCA-ACAAAC-GGGTCGCTCCCTATTTCTTAA
* * *
47629 GAGAGTATAGAACTCGAACAAACTTCAACAAACGGGTCCGCTCTCTATTCCTTCATAGAGTATAG
1 G-GAGTATAGAACTCGAACAATCTTCAACAAACGGGTCCGCTCCCTATTCCTTCAGAGAGTATAG
*
47694 AACTCGAACAATCTTCAACAAACGGGTTCGCTCCCTCTTTCTCTAA
65 AACTCGAACAATCTTCAACAAACGGG-TCGCTCCCTATTTCT-TAA
* ** ** * * * * *
47740 GGAGTATGGAACTCGAAC-ATCTTCTTCTTACGGGTTCGCTCCCTCTTTC-TCTAGGGAGTATGG
1 GGAGTATAGAACTCGAACAATCTTCAACAAACGGGTCCGCTCCCTATTCCTTC-AGAGAGTATAG
47803 AACTCGAACA
65 AACTCGAACA
47813 TTTTCTTCTT
Statistics
Matches: 329, Mismatches: 56, Indels: 31
0.79 0.13 0.07
Matches are distributed among these distances:
106 77 0.23
107 11 0.03
108 2 0.01
109 44 0.13
110 114 0.35
111 77 0.23
112 4 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (108 bp):
GGAGTATAGAACTCGAACAATCTTCAACAAACGGGTCCGCTCCCTATTCCTTCAGAGAGTATAGA
ACTCGAACAATCTTCAACAAACGGGTCGCTCCCTATTTCTTAA
Found at i:47781 original size:54 final size:54
Alignment explanation
Indices: 47686--47875 Score: 281
Period size: 54 Copynumber: 3.5 Consensus size: 54
47676 TTCCTTCATA
* ** ** *
47686 GAGTATAGAACTCGAACAATCTTCAACAAACGGGTTCGCTCCCTCTTTCTCTAAG
1 GAGTATGGAACTCGAAC-ATCTTCTTCTTACGGGTTCGCTCCCTCTTTCTCTAGG
47741 GAGTATGGAACTCGAACATCTTCTTCTTACGGGTTCGCTCCCTCTTTCTCTAGG
1 GAGTATGGAACTCGAACATCTTCTTCTTACGGGTTCGCTCCCTCTTTCTCTAGG
* *
47795 GAGTATGGAACTCGAACATTTTCTTCTTACAGGTTCGCTCCCTCTTTCTCTAGG
1 GAGTATGGAACTCGAACATCTTCTTCTTACGGGTTCGCTCCCTCTTTCTCTAGG
* *
47849 GAGTATGAAACTCGAACATTTTCTTCT
1 GAGTATGGAACTCGAACATCTTCTTCT
47876 GCTTTACTAC
Statistics
Matches: 126, Mismatches: 9, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
54 110 0.87
55 16 0.13
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.34
Consensus pattern (54 bp):
GAGTATGGAACTCGAACATCTTCTTCTTACGGGTTCGCTCCCTCTTTCTCTAGG
Found at i:48321 original size:36 final size:36
Alignment explanation
Indices: 48279--48378 Score: 121
Period size: 37 Copynumber: 2.7 Consensus size: 36
48269 AAAAAAGATA
* *
48279 TGCTTCACTACTCTTCGATGAAGACTTAAGATGG-TT
1 TGCTTCACTACTCTTAG-TGAAGACTTAAAATGGATT
* *
48315 TGCTTCACTACTCGTTAGTGAAGGCTCAAAATGGATT
1 TGCTTCACTACTC-TTAGTGAAGACTTAAAATGGATT
*
48352 TGCTTCACTACTCTTTGGTGAAGACTT
1 TGCTTCACTACTC-TTAGTGAAGACTT
48379 GGCTTTGCCC
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
36 26 0.48
37 28 0.52
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (36 bp):
TGCTTCACTACTCTTAGTGAAGACTTAAAATGGATT
Found at i:53132 original size:72 final size:72
Alignment explanation
Indices: 53015--53165 Score: 257
Period size: 72 Copynumber: 2.1 Consensus size: 72
53005 CCCCTAATAG
53015 GTTCTTGATCAGTTGCTATCATCACATTGGCTGCACCACTAACATTCAGATTCTCACCCGAAGTC
1 GTTCTTGATCAGTTGCTATCATCACATTGGCTGCACCACTAACATTCAGATTCTCACCCGAAGTC
*
53080 TTCATCT
66 TTCATAT
* * *
53087 GTTCTTGATCATTTGCTATCATCACATTGGTTGTACCACTAACATTCAGATTCTCACCCGAAGTC
1 GTTCTTGATCAGTTGCTATCATCACATTGGCTGCACCACTAACATTCAGATTCTCACCCGAAGTC
53152 TTCATAT
66 TTCATAT
*
53159 TTTCTTG
1 GTTCTTG
53166 TGTAATAGGG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.37
Consensus pattern (72 bp):
GTTCTTGATCAGTTGCTATCATCACATTGGCTGCACCACTAACATTCAGATTCTCACCCGAAGTC
TTCATAT
Found at i:53887 original size:55 final size:55
Alignment explanation
Indices: 53826--53956 Score: 163
Period size: 55 Copynumber: 2.4 Consensus size: 55
53816 AACATCTTCA
* ** * *
53826 GGATGTCTTTCTTTGTGGATCGGTCTTCAATCAGTTTCAAATTTCTTCATTCATC
1 GGATGTCCTTCTTCATGAATCGGTCTTCAATCAGGTTCAAATTTCTTCATTCATC
* * *
53881 GGATGTCCTTCTTCATGAATCGTTCTTCAGTCAGGTTCAAATTTCTTCATTCGTC
1 GGATGTCCTTCTTCATGAATCGGTCTTCAATCAGGTTCAAATTTCTTCATTCATC
** *
53936 AAATGTTCTTCTTCATGAATC
1 GGATGTCCTTCTTCATGAATC
53957 ATCTGAATGC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 65 1.00
ACGTcount: A:0.20, C:0.21, G:0.15, T:0.44
Consensus pattern (55 bp):
GGATGTCCTTCTTCATGAATCGGTCTTCAATCAGGTTCAAATTTCTTCATTCATC
Found at i:56149 original size:15 final size:16
Alignment explanation
Indices: 56124--56156 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
56114 ATTTAGGACG
56124 AAAATTAAATAAACAT
1 AAAATTAAATAAACAT
*
56140 AAAA-TAAATAGACAT
1 AAAATTAAATAAACAT
56155 AA
1 AA
56157 TTAGATACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.70, C:0.06, G:0.03, T:0.21
Consensus pattern (16 bp):
AAAATTAAATAAACAT
Found at i:66633 original size:60 final size:60
Alignment explanation
Indices: 66537--66674 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 60
66527 GTTTGAGATA
* * * **
66537 AAATTTAAATGTTTAAAAGTATGGGGACTAACTTAAAATGAGGGTCATAATTTGGAG-GTG
1 AAATTTAAATATTTAAAAGTATGAGGACTAACTTAAAATGAGAGTCAT-ATTTGGAGAAAG
* * * * *
66597 AAATTAAAATATTTAAAAGTTTGAGGATTAATTTAAAATGAGAGTCATATTTTGAGAAAG
1 AAATTTAAATATTTAAAAGTATGAGGACTAACTTAAAATGAGAGTCATATTTGGAGAAAG
66657 AAATTTAAATATTTAAAA
1 AAATTTAAATATTTAAAA
66675 TTTAAAAAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
59 7 0.11
60 59 0.89
ACGTcount: A:0.45, C:0.03, G:0.18, T:0.34
Consensus pattern (60 bp):
AAATTTAAATATTTAAAAGTATGAGGACTAACTTAAAATGAGAGTCATATTTGGAGAAAG
Found at i:66690 original size:60 final size:60
Alignment explanation
Indices: 66569--66692 Score: 135
Period size: 60 Copynumber: 2.1 Consensus size: 60
66559 GGGGACTAAC
* ** * ** *
66569 TTAAAATGAGGGTCATAATTTGGAGGTGAAATTAAAATATTTAAAAGTTTGAGGATTAAT
1 TTAAAATGAGAGTCATAATTTGGAGAAGAAATTAAAATATTTAAAAGTTTAAAAATCAAT
* *
66629 TTAAAATGAGAGTCAT-ATTTTGAGAAAGAAATTTAAATATTTAAAA-TTTAAAAAATCAAT
1 TTAAAATGAGAGTCATAATTTGGAG-AAGAAATTAAAATATTTAAAAGTTT-AAAAATCAAT
66689 TTAA
1 TTAA
66693 GATAAGAATC
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
59 10 0.19
60 43 0.81
ACGTcount: A:0.47, C:0.02, G:0.15, T:0.35
Consensus pattern (60 bp):
TTAAAATGAGAGTCATAATTTGGAGAAGAAATTAAAATATTTAAAAGTTTAAAAATCAAT
Found at i:78930 original size:36 final size:36
Alignment explanation
Indices: 78881--78985 Score: 101
Period size: 36 Copynumber: 2.9 Consensus size: 36
78871 ATAATTTGCG
*
78881 TTATAAT-TCTTTATTCTAGTTGTAATAAGTTTGAAA
1 TTATAATCT-TTTATTCTAGTTGTAAGAAGTTTGAAA
* * *
78917 TTATAATCTTTTATT-TTGATTATAAGAATTTTGAAA
1 TTATAATCTTTTATTCTAG-TTGTAAGAAGTTTGAAA
*
78953 TTATAATCCTTTGT-TTCGA-TTGTAAGAAGTTTG
1 TTATAAT-CTTT-TATTCTAGTTGTAAGAAGTTTG
78986 TAAGGAAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
35 2 0.04
36 46 0.82
37 7 0.12
38 1 0.02
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.50
Consensus pattern (36 bp):
TTATAATCTTTTATTCTAGTTGTAAGAAGTTTGAAA
Found at i:82519 original size:3 final size:3
Alignment explanation
Indices: 82511--82537 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
82501 ATTCCATTAC
82511 CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT
82538 GGTGATGGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:86256 original size:32 final size:31
Alignment explanation
Indices: 86208--86275 Score: 102
Period size: 32 Copynumber: 2.2 Consensus size: 31
86198 GAAAGCTTAA
86208 TATAAAAAAAATGTTTAAATTATAAC-TTTT
1 TATAAAAAAAATGTTTAAATTATAACGTTTT
*
86238 GTATAAAAATTAATGTTTAAATTATAACGTTTT
1 -TATAAAAA-AAATGTTTAAATTATAACGTTTT
86271 TATAA
1 TATAA
86276 GAGTGTTATT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
31 8 0.24
32 22 0.65
33 4 0.12
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (31 bp):
TATAAAAAAAATGTTTAAATTATAACGTTTT
Found at i:94253 original size:2 final size:2
Alignment explanation
Indices: 94246--94327 Score: 164
Period size: 2 Copynumber: 41.0 Consensus size: 2
94236 TGGTTCCCAC
94246 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
94288 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
94328 CCTTTATGAC
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 80 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95854 original size:3 final size:3
Alignment explanation
Indices: 95846--95910 Score: 85
Period size: 3 Copynumber: 21.0 Consensus size: 3
95836 AGACACCCGT
**
95846 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TATA TTA TGC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
*
95892 TTA TTAA TTA TTG TTA TTA
1 TTA TT-A TTA TTA TTA TTA
95911 ATATATTACA
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
3 48 0.89
4 6 0.11
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:97343 original size:76 final size:75
Alignment explanation
Indices: 97177--97345 Score: 223
Period size: 76 Copynumber: 2.2 Consensus size: 75
97167 TTATACTTGT
* *
97177 AATAGTTTTATTTTAGTCACTGATTTAATATTTTGTATATTTTCCTTGCTATTCAAATATGACCA
1 AATA-TTTTATTTTAGTCACTGATTTAATATTTTGTATAGTTTCCTTGATATTCAAATATGACCA
** * *
97242 TGAGATTTTTA
65 CCACATTTATA
* *
97253 AATATTTTATTTTAGTCACTGATTTAATATTTCATGTAT-GTTTCTTTGATATTCAAATATGGCC
1 AATATTTTATTTTAGTCACTGATTTAATATTT--TGTATAGTTTCCTTGATATTCAAATATGACC
97317 ACCACATTTATA
64 ACCACATTTATA
*
97329 AATCTTTTATTTTAGTC
1 AATATTTTATTTTAGTC
97346 CTTATTTTAC
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
75 28 0.34
76 49 0.60
77 5 0.06
ACGTcount: A:0.29, C:0.12, G:0.09, T:0.50
Consensus pattern (75 bp):
AATATTTTATTTTAGTCACTGATTTAATATTTTGTATAGTTTCCTTGATATTCAAATATGACCAC
CACATTTATA
Found at i:108048 original size:39 final size:40
Alignment explanation
Indices: 107993--108070 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 40
107983 ATAAATTGAC
*
107993 ATATAATCAAAATAAAATAATATTGATAATTTGAAAGTTG
1 ATATAATCAAAATAAAATAATATTGATAATTTAAAAGTTG
*
108033 ATATAAT-AAAATAAAATGATATTGATAATTTAAAAGTT
1 ATATAATCAAAATAAAATAATATTGATAATTTAAAAGTT
108071 ATACTATATA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
39 29 0.81
40 7 0.19
ACGTcount: A:0.54, C:0.01, G:0.09, T:0.36
Consensus pattern (40 bp):
ATATAATCAAAATAAAATAATATTGATAATTTAAAAGTTG
Found at i:124311 original size:28 final size:28
Alignment explanation
Indices: 124258--124312 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
124248 AAATTATATC
* * *
124258 TAATTTTTAAAATTATGTTTTGAATTTA
1 TAATTTTAAAAATTATGTATGGAATTTA
124286 TAATTTTAAAAATTA-GTATGGTAATTT
1 TAATTTTAAAAATTATGTATGG-AATTT
124313 TTAAAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (28 bp):
TAATTTTAAAAATTATGTATGGAATTTA
Done.