genome.fa.s6750.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006750.1 Hibiscus syriacus cultivar Beakdansim tig00016988_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  333982

Tables:   1   

This is table  1  of  1  ( 119 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3799--3833	15	2.3	15	100	0	70	40	20	40	0	1.52
4911--4972	30	2.1	30	90	6	99	32	19	17	30	1.95
4918--4976	30	2.0	29	96	3	109	30	20	20	28	1.97
10037--11266	294	4.2	298	93	1	2120	40	8	8	42	1.67
10943--10991	21	2.3	21	86	6	64	48	2	4	44	1.33
10037--11364	592	2.3	590	92	3	2223	40	8	9	42	1.67
14032--14064	17	1.9	17	93	0	57	63	0	0	36	0.95
30530--30661	60	2.2	60	80	2	158	37	8	22	31	1.84
32283--32330	21	2.2	22	85	14	64	33	2	2	62	1.18
33014--33056	16	2.7	16	89	7	61	39	4	0	55	1.20
33026--33057	16	2.0	16	100	0	64	43	0	0	56	0.99
40835--40860	4	6.5	4	100	0	52	46	0	0	53	1.00
42521--42561	13	3.2	13	82	0	55	31	2	19	46	1.63
43906--43965	30	2.0	31	86	3	86	33	23	6	36	1.81
44714--44764	2	26.0	2	96	4	95	49	0	0	50	1.00
45114--45171	2	29.0	2	100	0	116	50	0	0	50	1.00
49934--50018	31	2.8	31	87	1	118	45	8	11	34	1.70
52319--52374	14	4.1	15	73	17	59	44	0	0	55	0.99
53281--53319	17	2.4	17	95	4	71	43	0	5	51	1.24
60594--60670	22	3.5	21	71	3	55	31	20	16	31	1.95
61804--61833	15	2.0	15	100	0	60	33	33	20	13	1.91
62653--62760	31	3.5	30	85	1	144	54	10	10	25	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65601--65655	28	2.0	28	85	7	76	20	7	14	58	1.60
69339--69373	18	1.9	18	88	0	52	57	0	2	40	1.14
75874--75900	12	2.2	12	100	0	54	51	25	7	14	1.68
82912--82946	2	17.5	2	93	0	61	48	2	0	48	1.16
90014--90069	27	2.1	27	100	0	112	44	10	23	21	1.83
90437--90467	2	16.0	2	93	6	55	0	51	0	48	1.00
92374--92522	58	2.5	58	80	7	165	47	4	18	29	1.68
94045--94083	20	2.1	18	90	9	60	38	12	17	30	1.88
107032--107070	18	2.1	19	95	4	71	64	0	0	35	0.94
107033--107072	10	4.2	10	79	20	50	62	0	0	37	0.95
107693--107767	38	2.0	37	84	5	98	49	1	0	49	1.09
108563--108587	13	1.9	13	100	0	50	48	8	4	40	1.51
115280--115354	29	2.6	29	82	2	96	29	22	10	37	1.88
116026--116119	49	1.9	49	95	0	170	23	25	21	29	1.99
116677--116707	15	2.1	15	100	0	62	35	25	19	19	1.95
118756--118844	24	3.4	25	81	10	90	52	1	1	44	1.15
118824--118924	12	8.6	11	70	21	55	56	1	0	41	1.10
118800--118882	36	2.4	35	81	13	100	50	1	0	48	1.08
118767--118924	60	2.6	61	84	10	211	55	1	0	42	1.10
118837--118904	23	3.0	23	78	18	72	52	1	0	45	1.09
121616--121669	17	3.2	17	72	0	54	31	0	3	64	1.11
123248--123320	21	3.5	21	88	7	112	17	34	27	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123831--123925	28	3.2	28	86	8	109	52	3	4	40	1.37
123851--123932	34	2.4	34	87	2	110	53	3	4	37	1.40
124297--124774	128	3.7	128	94	0	843	32	22	24	20	1.98
124855--124895	8	5.2	8	82	5	57	36	29	0	34	1.58
127848--127952	46	2.2	48	84	6	142	42	20	10	26	1.84
129678--129729	27	1.9	27	84	0	68	51	19	7	21	1.71
134273--134327	24	2.2	26	90	9	87	65	1	0	32	1.03
141280--141309	3	10.0	3	100	0	60	66	0	33	0	0.92
141651--141711	32	1.9	32	86	6	88	37	18	13	31	1.88
147453--147479	3	9.0	3	100	0	54	66	0	0	33	0.92
148160--148190	2	15.5	2	93	0	53	48	0	0	51	1.00
152280--152462	51	3.6	51	92	0	276	26	41	13	18	1.88
152457--152614	69	2.3	68	76	5	156	27	48	5	18	1.70
152628--152726	32	3.1	32	78	7	112	26	47	9	17	1.77
152628--152726	31	3.1	33	78	4	105	26	47	9	17	1.77
152733--152859	42	3.0	42	80	9	141	23	55	9	11	1.65
164887--164951	25	2.6	25	92	2	103	27	24	26	21	1.99
168126--168155	13	2.4	13	94	5	53	80	0	0	20	0.72
171123--171193	32	2.3	31	81	11	83	43	1	4	50	1.30
172537--172595	29	2.2	27	85	11	77	42	3	15	38	1.63
172546--172608	29	2.1	30	88	2	92	46	3	15	34	1.62
183942--184039	38	2.5	39	80	6	108	24	22	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183825--184221	209	1.9	212	90	2	647	34	14	18	31	1.92
184257--184340	42	2.0	42	97	0	159	26	21	22	29	1.99
184258--184476	122	1.8	122	87	4	327	27	17	21	32	1.96
184386--184477	42	2.2	41	84	7	116	22	15	23	38	1.92
184845--185096	53	4.8	53	91	2	391	32	21	26	19	1.97
184845--185095	107	2.4	107	91	2	400	32	21	26	19	1.97
188441--188978	44	12.3	44	88	2	694	31	20	6	41	1.78
188628--188693	21	3.1	21	62	12	53	31	18	9	40	1.81
188446--188977	219	2.4	218	84	7	697	31	19	6	41	1.78
188844--188910	21	3.1	21	63	12	55	31	16	8	43	1.79
189116--190257	59	19.5	60	78	6	1076	30	20	11	37	1.88
189183--190257	176	6.1	176	95	1	1743	30	20	11	37	1.88
192697--192734	18	2.1	18	85	9	51	47	5	13	34	1.65
195568--195607	21	1.9	21	85	10	55	15	10	37	37	1.80
195692--195734	21	2.0	21	100	0	86	13	27	44	13	1.83
195768--195831	21	3.0	21	88	0	101	12	26	37	23	1.90
195921--195980	29	2.0	31	93	6	106	43	16	6	33	1.74
197766--197794	14	2.0	15	93	6	51	3	41	0	55	1.17
198768--198831	34	1.9	32	84	6	83	25	28	17	29	1.97
199053--199092	21	1.9	22	90	10	66	12	10	40	37	1.77
199120--199162	21	2.0	21	100	0	86	30	27	18	23	1.98
199198--199236	20	2.0	20	94	0	69	15	23	43	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199272--199346	21	4.0	20	76	18	88	16	28	30	25	1.96
199273--199341	35	1.9	36	94	2	122	17	24	31	26	1.97
199439--199498	29	2.0	31	93	6	106	43	16	6	33	1.74
200867--200924	30	1.9	30	92	0	98	39	8	6	44	1.62
207520--207638	56	2.1	56	86	7	163	31	23	19	26	1.98
215778--215937	65	2.5	64	93	1	266	31	23	18	26	1.98
217277--217342	30	2.2	30	89	5	98	36	7	7	48	1.60
223413--223452	19	2.0	20	90	4	64	20	10	7	62	1.50
224039--224198	60	2.7	60	82	1	185	33	20	6	40	1.78
224721--224751	13	2.4	13	94	0	53	61	0	0	38	0.96
227247--227467	89	2.5	89	93	0	370	37	23	17	22	1.94
228292--228329	5	7.8	5	88	5	60	0	18	57	23	1.40
228297--228323	14	1.9	14	100	0	54	0	14	59	25	1.36
228292--228328	19	1.9	19	100	0	74	0	16	59	24	1.37
234311--234387	5	14.8	5	76	12	75	7	19	51	20	1.71
234311--234388	22	3.7	22	84	8	108	8	19	51	20	1.73
234350--234386	19	1.9	19	94	0	65	2	16	56	24	1.53
234386--234444	19	3.1	19	82	7	75	30	28	23	16	1.97
239843--239908	30	2.2	30	91	0	105	36	9	7	46	1.64
240104--240128	12	2.1	12	100	0	50	8	44	16	32	1.76
243949--243978	13	2.3	13	94	0	51	63	0	0	36	0.95
255197--255222	7	3.7	7	100	0	52	0	15	26	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260352--260385	16	2.1	16	94	0	59	32	8	26	32	1.87
272906--272959	28	2.0	26	85	7	72	64	3	7	24	1.35
274369--274398	11	2.7	11	100	0	60	26	0	36	36	1.57
284133--284267	60	2.3	60	84	3	166	34	10	16	39	1.82
285129--285428	163	1.8	163	87	4	444	49	6	16	28	1.70
288345--288594	141	1.8	137	81	6	308	38	19	16	26	1.92
302123--302192	35	2.0	35	100	0	140	31	8	14	45	1.75
302307--302359	25	2.1	25	100	0	106	49	11	11	28	1.73
302651--302696	24	1.9	24	90	0	74	47	17	21	13	1.81

Tables:   1

The End!