genome.fa.s6751.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006751.1 Hibiscus syriacus cultivar Beakdansim tig00016991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108726

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
773--822	4	12.2	4	84	16	59	76	0	0	24	0.80
780--838	25	2.4	23	78	10	64	74	0	5	20	1.00
3692--3733	17	2.5	17	85	11	52	28	21	19	30	1.97
9853--9908	23	2.4	23	96	0	103	16	26	3	53	1.59
9894--9931	14	2.6	15	84	15	53	7	13	0	78	0.94
13840--13886	24	1.9	25	83	12	62	27	19	0	53	1.45
16829--16862	14	2.4	14	100	0	68	44	14	29	11	1.81
29826--29912	45	1.9	45	90	4	140	27	20	24	27	1.99
29935--29972	20	1.9	20	88	0	58	18	13	34	34	1.89
32146--32197	20	2.6	20	96	0	95	21	19	32	26	1.97
35848--35931	23	3.7	23	76	9	84	23	23	28	23	2.00
41317--41394	19	3.7	19	73	23	68	23	20	26	29	1.99
41316--41401	45	1.9	45	92	4	147	26	19	25	27	1.99
46155--46181	12	2.2	12	100	0	54	44	14	11	29	1.80
62696--62744	25	2.0	25	84	11	66	44	12	8	34	1.71
75186--75216	16	1.9	16	100	0	62	45	9	25	19	1.81
91598--91630	2	17.0	2	93	6	59	51	0	0	48	1.00
93372--93783	213	1.9	216	88	2	632	32	15	17	34	1.92
93755--93833	41	1.9	42	84	7	108	21	21	22	34	1.97
93613--94121	259	2.0	260	88	1	761	31	16	18	33	1.93
94469--94941	89	5.3	90	79	5	462	23	15	19	42	1.89
94469--94941	45	10.6	45	80	3	467	23	15	19	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94473--94941	134	3.5	133	79	5	414	22	15	19	42	1.89

Tables:   1

The End!