genome.fa.s6756.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006756.1 Hibiscus syriacus cultivar Beakdansim tig00017042_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88202

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248--275	12	2.3	12	100	0	56	17	25	17	39	1.92
8328--8498	60	2.9	58	79	8	184	33	15	3	46	1.63
8865--8920	29	1.9	29	92	0	94	39	8	17	33	1.81
17280--17311	2	16.0	2	100	0	64	50	0	0	50	1.00
21803--21879	23	3.2	24	76	16	61	51	0	1	46	1.09
21803--21856	21	2.5	22	82	11	67	51	0	0	48	1.00
21839--21903	25	2.5	25	82	9	78	52	0	4	43	1.22
21856--21914	21	2.6	22	80	15	75	50	0	6	42	1.28
22178--22294	39	3.0	39	71	15	91	41	3	15	39	1.64
22674--22745	29	2.5	29	81	0	81	47	15	9	27	1.77
23457--23500	3	15.0	3	80	4	54	31	4	2	61	1.28
23779--23809	13	2.4	13	94	0	53	45	25	16	12	1.83
27486--27531	21	2.2	20	84	3	56	15	13	15	56	1.68
30447--30787	107	3.3	102	79	11	370	31	16	11	40	1.84
30438--30787	104	3.3	101	78	12	361	31	16	11	41	1.84
30726--30864	36	3.8	36	83	5	165	33	17	13	35	1.89
30902--30960	31	1.9	31	93	3	102	32	13	10	44	1.77
31590--31650	31	1.9	31	83	9	79	32	13	11	42	1.79
32617--32666	3	17.0	3	79	4	57	34	4	2	60	1.27
35693--35750	25	2.3	25	96	0	107	37	10	18	32	1.85
35949--35989	3	14.0	3	80	14	50	36	0	0	63	0.95
38280--38330	18	2.9	17	72	18	50	25	0	1	72	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39575--39610	14	2.6	14	86	0	54	30	13	2	52	1.55
45062--45326	83	3.2	83	95	1	460	27	13	21	36	1.92
47995--48049	22	2.5	22	90	0	92	34	12	14	38	1.84
48452--49792	113	11.9	113	92	2	2081	37	13	18	29	1.89
48452--49792	338	4.0	338	93	1	2120	37	13	18	29	1.89
48452--49792	451	3.0	449	93	2	2208	37	13	18	29	1.89
50205--50542	76	4.4	76	95	1	579	22	21	20	34	1.96
50205--50542	153	2.2	152	94	2	579	22	21	20	34	1.96
50669--50709	3	14.0	3	80	14	50	36	0	0	63	0.95
53347--53443	50	2.0	50	91	2	160	20	38	9	31	1.84
54877--54907	10	3.0	10	90	9	53	77	0	19	3	0.90
55632--55874	125	2.0	121	82	8	294	28	11	10	49	1.72
55668--55916	125	2.0	124	80	8	283	28	10	11	49	1.71
56219--56259	22	1.9	21	90	5	64	70	4	0	24	1.06
56277--56327	23	2.2	23	100	0	102	47	15	7	29	1.74
56740--56770	16	1.9	16	100	0	62	19	9	19	51	1.74
70357--70396	15	2.7	15	96	0	71	22	37	5	35	1.76
71600--71664	7	8.9	7	94	5	103	73	0	0	26	0.83
71600--71664	15	4.4	15	90	9	107	73	0	0	26	0.83
72353--72466	60	1.9	60	88	0	174	38	15	10	35	1.82
72694--72733	10	3.8	11	90	9	57	27	0	5	67	1.11
73257--73340	29	2.9	29	85	0	123	42	16	5	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80154--80222	35	2.0	35	91	0	111	31	11	4	52	1.57

Tables:   1

The End!