genome.fa.s6758.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006758.1 Hibiscus syriacus cultivar Beakdansim tig00017052_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87331

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2080--2470	42	9.2	42	82	7	427	23	24	20	31	1.98
2080--2470	85	4.6	83	82	8	409	23	24	20	31	1.98
5716--5807	3	31.0	3	97	2	177	66	0	0	33	0.92
6486--6588	21	4.9	21	72	4	100	25	17	23	33	1.96
6486--6581	42	2.3	42	88	0	147	23	17	21	36	1.95
7366--7428	19	3.2	20	76	13	60	20	23	22	33	1.97
19892--19965	31	2.3	32	84	6	98	51	10	0	37	1.37
20279--20310	2	16.0	2	93	0	55	50	3	0	46	1.17
22214--22252	20	2.0	20	89	0	60	25	17	15	41	1.89
24905--24962	30	1.9	30	86	6	82	32	22	18	25	1.97
25752--25808	17	3.5	17	76	4	55	24	29	28	17	1.97
27666--27696	15	2.1	15	93	0	53	45	25	6	22	1.76
43133--43188	29	1.9	29	92	0	85	39	17	8	33	1.81
44395--44441	13	3.7	13	77	2	51	44	10	2	42	1.51
51732--51773	18	2.1	21	87	12	63	23	0	2	73	0.94
56055--56117	29	2.2	28	80	5	72	38	3	4	53	1.38
56068--56132	29	2.3	29	91	2	105	36	0	4	58	1.19
56425--56468	12	3.8	11	88	8	61	11	6	47	34	1.66
56423--56468	24	2.0	24	91	4	76	10	8	47	32	1.69
56486--56546	24	2.6	25	78	17	69	44	0	0	55	0.99
56584--56627	13	3.5	13	93	3	72	13	15	52	18	1.75
56691--56715	6	4.2	6	100	0	50	0	64	16	20	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57802--58746	263	3.6	261	84	2	1158	28	17	15	38	1.90
59314--59372	20	2.9	20	92	2	91	45	23	15	15	1.84
59396--60170	182	4.2	182	87	2	1083	44	12	14	27	1.82
59339--60670	530	2.5	532	85	5	1767	44	13	15	27	1.83
60172--60670	182	2.7	181	91	1	775	44	12	15	27	1.83
61057--61101	19	2.4	19	92	3	74	42	0	20	37	1.52
61352--61390	18	2.2	18	86	9	53	46	5	7	41	1.55
62341--62404	24	3.0	20	74	25	69	48	3	6	42	1.44
64546--64594	19	2.6	19	87	9	66	32	2	8	57	1.40
65020--65376	169	2.1	172	91	4	576	41	15	15	26	1.88
65819--65876	15	3.7	15	79	6	62	22	48	1	27	1.60
68431--69283	199	4.3	199	85	3	1124	42	15	13	27	1.85
71779--72485	198	3.6	194	78	9	651	40	14	14	30	1.86
72496--72552	23	2.5	23	82	0	69	35	12	7	45	1.69

Tables:   1

The End!