genome.fa.s6759.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006759.1 Hibiscus syriacus cultivar Beakdansim tig00017056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64324

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5498--5544	17	2.8	17	90	6	69	72	0	4	23	1.02
8479--8553	23	3.4	22	87	7	91	30	25	16	28	1.96
8490--8553	23	2.8	23	90	4	94	31	25	17	26	1.97
11248--11318	23	3.0	22	82	10	79	49	0	1	49	1.09
11308--11372	28	2.3	29	75	15	66	52	0	3	44	1.16
14675--14880	82	2.5	82	82	3	225	31	15	22	31	1.95
14650--14797	41	3.6	41	74	17	144	30	15	22	31	1.95
15096--15173	41	1.9	41	86	5	113	23	24	21	30	1.99
15190--15286	42	2.3	43	85	5	126	23	15	18	42	1.88
18356--18403	21	2.2	23	85	7	64	35	2	0	62	1.07
24134--24221	21	4.0	21	79	10	88	43	21	34	1	1.60
24609--24773	85	1.9	85	81	7	201	36	24	19	19	1.95
24608--24857	43	5.8	42	81	7	216	36	25	17	20	1.94
24694--24857	87	1.9	87	83	5	215	36	26	16	20	1.94
25708--25811	33	3.2	33	100	0	208	33	8	25	32	1.86
26438--26635	20	9.8	20	68	15	86	39	25	17	17	1.91
26563--26791	20	11.4	20	76	7	169	39	25	17	17	1.92
26563--26791	40	5.7	39	87	2	206	39	25	17	17	1.92
27484--27530	24	2.0	24	87	8	69	25	14	21	38	1.92
27705--27729	12	2.1	12	100	0	50	72	0	28	0	0.86
30023--30212	19	10.7	19	76	20	205	44	17	22	14	1.86
30023--30206	53	3.5	53	95	3	327	45	17	22	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29990--30188	86	2.3	87	83	9	239	45	19	22	13	1.85
30202--30318	53	2.2	53	95	1	218	14	23	17	44	1.85
30221--30318	19	5.4	19	82	13	134	15	22	16	45	1.84
30425--30461	14	2.6	14	91	0	65	45	21	0	32	1.52
32376--32472	20	5.2	20	72	18	100	46	17	24	11	1.81
32374--32438	21	3.1	21	82	4	96	47	15	26	10	1.78
32423--32479	14	3.7	14	75	20	60	43	22	24	8	1.81
32374--32496	33	3.5	33	90	8	165	46	18	24	10	1.81
32513--32569	14	3.7	14	70	20	51	10	24	21	43	1.83
32508--32576	33	2.1	33	97	0	129	10	23	18	47	1.79
32557--32630	21	3.5	21	76	7	87	14	21	16	47	1.82
32710--32780	33	2.2	33	94	0	124	47	16	23	11	1.79
33160--33320	20	7.6	20	73	15	110	18	18	27	36	1.93
33172--33268	48	2.0	49	84	6	126	22	16	26	34	1.95
34783--34871	38	2.4	39	92	5	148	37	38	11	13	1.81
34922--34947	5	5.2	5	100	0	52	19	61	19	0	1.35
34859--35012	72	2.2	71	91	1	245	36	32	14	16	1.89
35375--35417	18	2.4	18	84	0	59	27	23	13	34	1.93
36184--36291	33	3.3	33	82	2	119	25	33	18	22	1.97
36855--36917	32	2.0	32	100	0	126	25	31	12	30	1.93
42740--42767	14	2.0	14	100	0	56	21	14	14	50	1.78
43658--43716	2	29.5	2	100	0	118	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43758--43788	14	2.2	14	94	0	53	45	29	3	22	1.68
46759--46796	17	2.2	18	95	4	69	68	2	0	28	1.03
51734--51791	29	2.0	29	89	0	89	13	36	27	22	1.92
51836--51875	14	2.9	14	92	0	62	22	35	30	12	1.91
51906--51980	33	2.3	33	86	4	98	26	24	38	10	1.88
51984--52097	29	3.9	29	98	0	219	20	30	37	11	1.88
57502--57632	68	1.9	68	96	0	244	34	21	16	28	1.94
58655--58818	39	4.4	36	72	20	110	47	4	7	40	1.51
58688--58856	73	2.4	68	77	18	163	45	4	6	43	1.50
58959--58997	18	2.2	18	86	9	53	23	15	0	61	1.33
61571--61627	3	20.7	3	83	16	79	66	0	0	33	0.92
61571--61627	8	6.6	8	84	11	69	66	0	0	33	0.92

Tables:   1

The End!