Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000676.1 Hibiscus syriacus cultivar Beakdansim tig00001311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83524

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6455--6483
2
14.5
2
100
0
58
48
0
0
51
1.00
10734--10775
2
21.0
2
95
0
75
47
0
2
50
1.14
20855--20921
22
3.0
22
95
2
116
26
28
25
19
1.99
21216--21287
29
2.5
29
93
0
117
38
12
9
38
1.76
21557--21599
4
10.8
4
82
9
52
0
20
2
76
0.89
21557--21599
21
2.2
19
87
8
59
0
20
2
76
0.89
21602--21642
21
2.0
21
90
0
64
9
31
31
26
1.89
27738--27804
22
3.0
22
95
2
116
26
28
25
19
1.99
28099--28170
29
2.5
29
93
0
117
38
12
9
38
1.76
28438--28480
4
10.8
4
82
9
52
0
20
2
76
0.89
28438--28480
21
2.2
19
87
8
59
0
20
2
76
0.89
28483--28523
21
2.0
21
90
0
64
9
31
31
26
1.89
29410--29453
22
2.0
22
86
4
63
45
0
22
31
1.53
30366--30410
23
2.0
23
86
0
63
20
24
28
26
1.99
33673--33717
21
2.1
21
83
0
54
33
28
22
15
1.95
34298--34332
18
1.9
18
88
11
54
54
5
17
22
1.64
34660--34711
2
26.0
2
100
0
104
50
0
0
50
1.00
35378--35423
23
2.0
23
86
0
65
19
23
26
30
1.98
36388--36441
23
2.3
23
87
6
74
16
27
24
31
1.96
36422--36468
24
1.9
25
91
4
78
12
25
25
36
1.92
39043--39081
19
2.1
19
95
0
69
25
10
7
56
1.59
39965--39994
15
2.0
15
93
0
51
33
26
3
36
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60232--60256
11
2.3
11
100
0
50
28
8
8
56
1.57
64824--65036
103
2.1
103
97
0
399
25
14
23
36
1.93
65053--65120
23
3.0
23
86
0
91
22
27
25
25
1.99
67341--67391
19
2.6
20
84
3
68
43
21
17
17
1.88
67380--67418
20
2.0
20
94
0
69
56
15
12
15
1.68
67490--67587
6
16.5
6
98
1
189
0
16
51
32
1.45
67677--67867
20
9.4
20
85
3
229
21
24
16
37
1.93
67710--67881
83
2.1
83
89
0
263
22
24
16
37
1.93
67902--67953
20
2.6
20
87
0
77
11
13
19
55
1.68
75915--75949
2
17.5
2
93
0
61
0
48
2
48
1.16
79106--79137
5
6.2
5
92
7
55
0
21
0
78
0.76
80067--80135
24
2.8
25
77
4
68
43
1
8
46
1.43
80727--80816
45
2.0
46
91
2
146
36
21
7
34
1.82

Tables:   1

The End!