Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006760.1 Hibiscus syriacus cultivar Beakdansim tig00017060_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 203478
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Found at i:9799 original size:249 final size:251
Alignment explanation
Indices: 9320--9815 Score: 831
Period size: 249 Copynumber: 2.0 Consensus size: 251
9310 CAAACCGCAA
9320 TCAGGGTAAGAGAAAACTCACAATATGTTTTATTCTTATCTGTAAAATTCTTAAATCTATGGACT
1 TCAGGGTAAGAGAAAACT-ACAATATGTTTTATTCTTATC-GTAAAATTCTTAAATCTATGGACT
9385 CACACAAGTAATAATGGCTTTTATCATGTGAATGGAGATTAACAATGCAAAAAAAAAAAACCTCA
64 CACACAAGTAATAATGGCTTTTATCATGTGAATGGAGATTAACAATGCAAAAAAAAAAAACCTCA
* *
9450 AAGACACTAAAATCTGTCTTTCTGAGATCCTGAAATGTATTGGGAATTAATGCTGAAGGAACAAA
129 AAGACAATAAAATCTGTCTTTCTGAGATCCTGAAATGTATTAGGAATTAATGCTGAAGGAACAAA
9515 CACGCAGATATCATTTCATCCCATAGCACAAAATCTAGCTTCCCAGAAAGTACTGCAG
194 CACGCAGATATCATTTCATCCCATAGCACAAAATCTAGCTTCCCAGAAAGTACTGCAG
**
9573 TCAGGGTAAGAGAAAACT-CAATATGTTTTATTCTTATC-TATGATTCTTAAATCTATGGACTCA
1 TCAGGGTAAGAGAAAACTACAATATGTTTTATTCTTATCGTAAAATTCTTAAATCTATGGACTCA
**
9636 CACAAGTAATAATGGCTTTTATCATGTGAATGGAGATTAA-AATGCCAAAAAAAAATTA-CTCAA
66 CACAAGTAATAATGGCTTTTATCATGTGAATGGAGATTAACAATG-CAAAAAAAAAAAACCTCAA
*
9699 A-ACAATAAAATCTGTCTTTCTGAGATCCTGAAATGTATTAGGCATTAATGCTGAAGGAACAAAA
130 AGACAATAAAATCTGTCTTTCTGAGATCCTGAAATGTATTAGGAATTAATGCTGAAGGAAC-AAA
* *
9763 CATGCAGATATCATTTGATCCCATAGCACAAAAATCTAGCTTCCCAGAAAGTA
194 CACGCAGATATCATTTCATCCCATAGCAC-AAAATCTAGCTTCCCAGAAAGTA
9816 ATTCACTAAT
Statistics
Matches: 231, Mismatches: 9, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
247 56 0.24
248 40 0.17
249 97 0.42
251 20 0.09
253 18 0.08
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (251 bp):
TCAGGGTAAGAGAAAACTACAATATGTTTTATTCTTATCGTAAAATTCTTAAATCTATGGACTCA
CACAAGTAATAATGGCTTTTATCATGTGAATGGAGATTAACAATGCAAAAAAAAAAAACCTCAAA
GACAATAAAATCTGTCTTTCTGAGATCCTGAAATGTATTAGGAATTAATGCTGAAGGAACAAACA
CGCAGATATCATTTCATCCCATAGCACAAAATCTAGCTTCCCAGAAAGTACTGCAG
Found at i:10177 original size:27 final size:27
Alignment explanation
Indices: 10144--10204 Score: 122
Period size: 27 Copynumber: 2.3 Consensus size: 27
10134 TTACAAAATC
10144 ATCTCTATAGGAATGGTAACAAATCAT
1 ATCTCTATAGGAATGGTAACAAATCAT
10171 ATCTCTATAGGAATGGTAACAAATCAT
1 ATCTCTATAGGAATGGTAACAAATCAT
10198 ATCTCTA
1 ATCTCTA
10205 ATTCCTACAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.31
Consensus pattern (27 bp):
ATCTCTATAGGAATGGTAACAAATCAT
Found at i:13902 original size:27 final size:27
Alignment explanation
Indices: 13871--13938 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
13861 TCTATTTACA
13871 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
13898 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
13925 AAATC--ATCTCTATA
1 AAATCATATCTCTATA
13939 ATTCCTACAT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 9 0.22
27 32 0.78
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (27 bp):
AAATCATATCTCTATAGGAATGGTAAC
Found at i:22492 original size:24 final size:24
Alignment explanation
Indices: 22465--22536 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
22455 GTAAACGGAG
* *
22465 ATATCAGAAATCAAAACAAAATTC
1 ATATCAGAAATCAGAACAGAATTC
* *
22489 ATATCAGATATCAGAACAGAATCC
1 ATATCAGAAATCAGAACAGAATTC
*
22513 AGATCAG-AATCAGAACAGAATTC
1 ATATCAGAAATCAGAACAGAATTC
22536 A
1 A
22537 GGTAACGTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
23 15 0.37
24 26 0.63
ACGTcount: A:0.51, C:0.18, G:0.11, T:0.19
Consensus pattern (24 bp):
ATATCAGAAATCAGAACAGAATTC
Found at i:22515 original size:12 final size:11
Alignment explanation
Indices: 22493--22533 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
22483 AAATTCATAT
22493 CAGATATCAGAA
1 CAGA-ATCAGAA
*
22505 CAGAATCCAGAT
1 CAGAAT-CAGAA
22517 CAGAATCAGAA
1 CAGAATCAGAA
22528 CAGAAT
1 CAGAAT
22534 TCAGGTAACG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
11 12 0.46
12 14 0.54
ACGTcount: A:0.49, C:0.20, G:0.17, T:0.15
Consensus pattern (11 bp):
CAGAATCAGAA
Found at i:22537 original size:12 final size:12
Alignment explanation
Indices: 22499--22537 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
22489 ATATCAGATA
22499 TCAGAACAGAAT
1 TCAGAACAGAAT
* *
22511 CCAGATCAGAA-
1 TCAGAACAGAAT
22522 TCAGAACAGAAT
1 TCAGAACAGAAT
22534 TCAG
1 TCAG
22538 GTAACGTATC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 9 0.41
12 13 0.59
ACGTcount: A:0.46, C:0.21, G:0.18, T:0.15
Consensus pattern (12 bp):
TCAGAACAGAAT
Found at i:24983 original size:20 final size:20
Alignment explanation
Indices: 24958--24997 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
24948 TTTAATGCTC
24958 GGTCAAAGCCAGTCAACGGT
1 GGTCAAAGCCAGTCAACGGT
* *
24978 GGTCAACGCCGGTCAACGGT
1 GGTCAAAGCCAGTCAACGGT
24998 CAATGGTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.25, C:0.28, G:0.33, T:0.15
Consensus pattern (20 bp):
GGTCAAAGCCAGTCAACGGT
Found at i:27101 original size:24 final size:24
Alignment explanation
Indices: 27074--27130 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
27064 GCAAACGGAG
*
27074 ATATCAGAAATCAAAACAGAATTC
1 ATATCAGAAATCAAAACAGAATCC
* *
27098 ATATCAGATATCAGAACAGAATCC
1 ATATCAGAAATCAAAACAGAATCC
*
27122 AGATCAGAA
1 ATATCAGAA
27131 TCAGAATTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.51, C:0.18, G:0.12, T:0.19
Consensus pattern (24 bp):
ATATCAGAAATCAAAACAGAATCC
Found at i:30494 original size:2 final size:2
Alignment explanation
Indices: 30487--30511 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
30477 TCAGTTCTTT
30487 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
30512 CTCTTTCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:31741 original size:24 final size:24
Alignment explanation
Indices: 31714--31823 Score: 109
Period size: 24 Copynumber: 4.6 Consensus size: 24
31704 GTAAACGGAG
*
31714 ATATCAGAAATCAAAACAGAATTC
1 ATATCAGAAATCAGAACAGAATTC
* *
31738 ATATCAGATATCAGAACAGAATCC
1 ATATCAGAAATCAGAACAGAATTC
*
31762 AGATCA-AAATCAGAACAGAATTC
1 ATATCAGAAATCAGAACAGAATTC
* * *
31785 ATGTAACG-TATCAGAACAGAATTC
1 ATATCA-GAAATCAGAACAGAATTC
*
31809 A-ATTCGGAAATCAGA
1 ATA-TCAGAAATCAGA
31824 TAAAATATTT
Statistics
Matches: 68, Mismatches: 14, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
23 19 0.28
24 49 0.72
ACGTcount: A:0.48, C:0.17, G:0.14, T:0.21
Consensus pattern (24 bp):
ATATCAGAAATCAGAACAGAATTC
Found at i:31757 original size:12 final size:11
Alignment explanation
Indices: 31722--31806 Score: 55
Period size: 12 Copynumber: 7.3 Consensus size: 11
31712 AGATATCAGA
*
31722 AATCAAAACAG
1 AATCAGAACAG
* *
31733 AATTCATATCAG
1 AA-TCAGAACAG
31745 ATATCAGAACAG
1 A-ATCAGAACAG
* *
31757 AATCCAGATCAA
1 AAT-CAGAACAG
31769 AATCAGAACAG
1 AATCAGAACAG
31780 AATTCATGTAAC-G
1 AA-TCA-G-AACAG
*
31793 TATCAGAACAG
1 AATCAGAACAG
31804 AAT
1 AAT
31807 TCAATTCGGA
Statistics
Matches: 57, Mismatches: 10, Indels: 14
0.70 0.12 0.17
Matches are distributed among these distances:
10 3 0.05
11 16 0.28
12 31 0.54
13 4 0.07
14 3 0.05
ACGTcount: A:0.49, C:0.18, G:0.13, T:0.20
Consensus pattern (11 bp):
AATCAGAACAG
Found at i:31797 original size:47 final size:48
Alignment explanation
Indices: 31716--31806 Score: 132
Period size: 47 Copynumber: 1.9 Consensus size: 48
31706 AAACGGAGAT
*
31716 ATCAGAAATCAAAACAGAATTCATATCAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAAAACAGAATTCATATAAGATATCAGAACAGAATCCAG
* *
31764 ATCA-AAATCAGAACAGAATTCATGTAACG-TATCAGAACAGAAT
1 ATCAGAAATCAAAACAGAATTCATATAA-GATATCAGAACAGAAT
31807 TCAATTCGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
47 34 0.87
48 5 0.13
ACGTcount: A:0.49, C:0.18, G:0.13, T:0.20
Consensus pattern (48 bp):
ATCAGAAATCAAAACAGAATTCATATAAGATATCAGAACAGAATCCAG
Found at i:34276 original size:8 final size:7
Alignment explanation
Indices: 34248--34282 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
34238 TGGTCAACGT
34248 CGGTCAA
1 CGGTCAA
34255 CGGTCAA
1 CGGTCAA
34262 CGGTCAA
1 CGGTCAA
34269 CGGGTCAA
1 C-GGTCAA
34277 CAGGTC
1 C-GGTC
34283 GGGTCGGGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
7 15 0.58
8 11 0.42
ACGTcount: A:0.26, C:0.29, G:0.31, T:0.14
Consensus pattern (7 bp):
CGGTCAA
Found at i:36525 original size:5 final size:5
Alignment explanation
Indices: 36515--36541 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
36505 TTATATCATG
36515 TATTT TATTT TATTT TATTT TATTT TA
1 TATTT TATTT TATTT TATTT TATTT TA
36542 AGGAGTCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:37441 original size:2 final size:2
Alignment explanation
Indices: 37434--37480 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
37424 GAACCTAAAT
37434 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37476 TA TA T
1 TA TA T
37481 TCTTTTATAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:39338 original size:38 final size:36
Alignment explanation
Indices: 39207--39533 Score: 278
Period size: 37 Copynumber: 8.9 Consensus size: 36
39197 TTTTGATTTT
* *
39207 TTTTAGAAAATGTATATATTATATAGTTTTTTAAAACA
1 TTTTA-AAAATATATATA-TATATAGTTTTTAAAAACA
* *
39245 TTTTGAAAATATATATAATATATAGTTTTTGAAAACA
1 TTTTAAAAATATATAT-ATATATAGTTTTTAAAAACA
*
39282 TTTT--GAA-A-ATATATATATAGTTTTTAAAAACA
1 TTTTAAAAATATATATATATATAGTTTTTAAAAACA
* *
39314 TTTTAAAAACTTATATATATATATAG-TTTTGAAATCA
1 TTTTAAAAA--TATATATATATATAGTTTTTAAAAACA
* * * *
39351 TTTTAAAAATTTATATAATATATA-ATTTTGAAATCA
1 TTTTAAAAATATATAT-ATATATAGTTTTTAAAAACA
* * *
39387 TTTTAAAAACT-TATATAATGTATGGTTTTTTAAAAATA
1 TTTTAAAAA-TATATAT-ATATATAG-TTTTTAAAAACA
*
39425 TTTTGAAAATATATATATAGTATATAATTTTTAAAAACA
1 TTTT-AAAA-ATATATATA-TATATAGTTTTTAAAAACA
* * *
39464 TTTTGAAAACTATATA-ATATATAG-TTTTGAAAACTTT
1 TTTT-AAAAATATATATATATATAGTTTTTAAAAAC--A
39501 TTTTAAAAATATATATAATATATAG-TTTTAAAA
1 TTTTAAAAATATATAT-ATATATAGTTTTTAAAA
39534 TATATTATTA
Statistics
Matches: 244, Mismatches: 25, Indels: 40
0.79 0.08 0.13
Matches are distributed among these distances:
32 23 0.09
33 4 0.02
34 3 0.01
35 17 0.07
36 54 0.22
37 57 0.23
38 50 0.20
39 26 0.11
40 10 0.04
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.46
Consensus pattern (36 bp):
TTTTAAAAATATATATATATATAGTTTTTAAAAACA
Found at i:39570 original size:14 final size:14
Alignment explanation
Indices: 39541--39576 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
39531 AAATATATTA
*
39541 TTATTATTATTCATT
1 TTATT-TTATTAATT
39556 TTATTTTATTAATT
1 TTATTTTATTAATT
39570 TTATTTT
1 TTATTTT
39577 TTTCCAAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (14 bp):
TTATTTTATTAATT
Found at i:40784 original size:36 final size:36
Alignment explanation
Indices: 40737--40815 Score: 158
Period size: 36 Copynumber: 2.2 Consensus size: 36
40727 ATTTATTCAT
40737 TTTTTTTAAAATTTAACACTCTTTTATTCTATTTTA
1 TTTTTTTAAAATTTAACACTCTTTTATTCTATTTTA
40773 TTTTTTTAAAATTTAACACTCTTTTATTCTATTTTA
1 TTTTTTTAAAATTTAACACTCTTTTATTCTATTTTA
40809 TTTTTTT
1 TTTTTTT
40816 CACCTTTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (36 bp):
TTTTTTTAAAATTTAACACTCTTTTATTCTATTTTA
Found at i:42638 original size:15 final size:15
Alignment explanation
Indices: 42618--42649 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
42608 CATAAATCCC
42618 CTATATGGAAAAACT
1 CTATATGGAAAAACT
42633 CTATATGGAAAAACT
1 CTATATGGAAAAACT
42648 CT
1 CT
42650 TCCTCTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (15 bp):
CTATATGGAAAAACT
Found at i:43739 original size:42 final size:42
Alignment explanation
Indices: 43687--43790 Score: 138
Period size: 42 Copynumber: 2.5 Consensus size: 42
43677 GCCACTATAA
* * *
43687 ACCACCCTATTGCGGCGTTT-TAGGTATATACACCGCTAATTT
1 ACCACTCTATTGCGGCGTTTGT-GGTATAAACACCGCTAAATT
* *
43729 ACCACTCTATTGTGGCGTTTGTGGTATAAACGCCGCTAAATT
1 ACCACTCTATTGCGGCGTTTGTGGTATAAACACCGCTAAATT
*
43771 ACCACTCTATTGCTGCGTTT
1 ACCACTCTATTGCGGCGTTT
43791 AGGCTAAAAC
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 53 0.98
43 1 0.02
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (42 bp):
ACCACTCTATTGCGGCGTTTGTGGTATAAACACCGCTAAATT
Found at i:43995 original size:42 final size:42
Alignment explanation
Indices: 43949--44031 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
43939 CCCTATTGTG
* *
43949 GTGTTT-TAGGTATAAACGCCGCTAATTTACCACTCTATTACA
1 GTGTTTGTA-GTACAAACGCCGCTAAATTACCACTCTATTACA
43991 GTGTTTGTAGTACAAACGCCGCTAAATTACCACTCTATTAC
1 GTGTTTGTAGTACAAACGCCGCTAAATTACCACTCTATTAC
44032 GGCGTTTGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 36 0.95
43 2 0.05
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (42 bp):
GTGTTTGTAGTACAAACGCCGCTAAATTACCACTCTATTACA
Found at i:44039 original size:42 final size:41
Alignment explanation
Indices: 43962--44096 Score: 132
Period size: 42 Copynumber: 3.3 Consensus size: 41
43952 TTTTAGGTAT
* * *
43962 AAACGCCGCTAATTTACCACTCTATTACAGTGTTTGTAGTA
1 AAACGCCGCTAAATTACCACTCTATTACGGCGTTTGTAGTA
*
44003 CAAACGCCGCTAAATTACCACTCTATTACGGCGTTTG-GGCTA
1 -AAACGCCGCTAAATTACCACTCTATTACGGCGTTTGTAG-TA
* * * * *
44045 AAACGCCGC-AAATGT-CTACTATATTACGGCATTTTTACTA
1 AAACGCCGCTAAAT-TACCACTCTATTACGGCGTTTGTAGTA
44085 TAAACGCCGCTA
1 -AAACGCCGCTA
44097 TTGATTAATC
Statistics
Matches: 78, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
40 22 0.28
41 20 0.26
42 36 0.46
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (41 bp):
AAACGCCGCTAAATTACCACTCTATTACGGCGTTTGTAGTA
Found at i:44149 original size:247 final size:245
Alignment explanation
Indices: 43592--44262 Score: 814
Period size: 247 Copynumber: 2.7 Consensus size: 245
43582 CGTTTATAAA
* * ** *
43592 AAACGCCACTATTGATTAATACTATTGTAGCGTTTGTAAAAAAACGACGCTAAAGTATTCTTCAT
1 AAACGCC-CTATTGATTAATCCT-TTGTGGCGTTTGTCTAAAAACGACGCAAAAGTATTCTTCAT
*
43657 TGCGGCATTTGTTGG-AAAACGCCACTATAAACCACCCTATTGCGGCGTTTTAGGTATATACACC
64 TGCGGCATTTGTTGGAAAAACGCCACTATAAACCACCCTATTGCGGCGTTTTAGGTATAAACACC
*** * * * *
43721 GCTAATTTACCACTCTATTGTGGCGTTTGTGGTATAAACGCCGCTAAATTACCACTCTATTGCTG
129 GCTAATTTACCACTCTATTACAGCGTTTGTAGTACAAACGCCGCTAAATTACCACTCTATTACGG
* ** *
43786 CGTTTAGGCTAAAACGCCACTAAATGTCTACTCTATTGTGGTATTTTACTAT
194 CGTTTAGGCTAAAACGCCACTAAATGTCTACTATATTACGGCATTTTACTAT
* * * * * *
43838 AAACACCCATTATTGATTAACCCTTTTATGGTGTTTATCTAAAAATGACGCAAAAGTATTCTTCA
1 AAACGCCC--TATTGATTAATCC-TTTGTGGCGTTTGTCTAAAAACGACGCAAAAGTATTCTTCA
* * * *
43903 TTGCGGCATTTGTTGGAAAAACACCACTATAAACCACCCTATTGTGGTGTTTTAGGTATAAACGC
63 TTGCGGCATTTGTTGGAAAAACGCCACTATAAACCACCCTATTGCGGCGTTTTAGGTATAAACAC
*
43968 CGCTAATTTACCACTCTATTACAGTGTTTGTAGTACAAACGCCGCTAAATTACCACTCTATTACG
128 CGCTAATTTACCACTCTATTACAGCGTTTGTAGTACAAACGCCGCTAAATTACCACTCTATTACG
* *
44033 GCGTTTGGGCTAAAACGCCGC-AAATGTCTACTATATTACGGCATTTTTACTAT
193 GCGTTTAGGCTAAAACGCCACTAAATGTCTACTATATTACGGCA-TTTTACTAT
* *
44086 AAACGCCGCTATTGATTAATCCTTCTGTGGCGTTTGTCTAAAAACGATGCAAAAGTGTTCTTCAT
1 AAACGCC-CTATTGATTAATCCTT-TGTGGCGTTTGTCTAAAAACGACGCAAAAGTATTCTTCAT
* * * * * ** * *
44151 TGCGACGTTTGTTGGAAAAACGCCACTATAAACCACCCTATTACGACATTTTTA-CCAAAAACGC
64 TGCGGCATTTGTTGGAAAAACGCCACTATAAACCACCCTATTGCGGC-GTTTTAGGTATAAACAC
* *
44215 CGCTATATTT-CTAC-CTATTACAGCGTTTGTACG-AAAAACGCCGCTAAA
128 CGCTA-ATTTACCACTCTATTACAGCGTTTGTA-GTACAAACGCCGCTAAA
44263 GTCTCAATTT
Statistics
Matches: 363, Mismatches: 52, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
245 1 0.00
246 38 0.10
247 179 0.49
248 144 0.40
249 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (245 bp):
AAACGCCCTATTGATTAATCCTTTGTGGCGTTTGTCTAAAAACGACGCAAAAGTATTCTTCATTG
CGGCATTTGTTGGAAAAACGCCACTATAAACCACCCTATTGCGGCGTTTTAGGTATAAACACCGC
TAATTTACCACTCTATTACAGCGTTTGTAGTACAAACGCCGCTAAATTACCACTCTATTACGGCG
TTTAGGCTAAAACGCCACTAAATGTCTACTATATTACGGCATTTTACTAT
Found at i:48874 original size:34 final size:34
Alignment explanation
Indices: 48831--48898 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
48821 TCAAAGTCCG
*
48831 TATGCTAGAAATAGGACCGCTAATCTGTAAGAAA
1 TATGCTAGAAATAGGACCGCGAATCTGTAAGAAA
48865 TATGCTAGAAATAGGACCGCGAATCTGTAAGAAA
1 TATGCTAGAAATAGGACCGCGAATCTGTAAGAAA
48899 ATTTTGAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (34 bp):
TATGCTAGAAATAGGACCGCGAATCTGTAAGAAA
Found at i:54174 original size:27 final size:27
Alignment explanation
Indices: 54136--54234 Score: 189
Period size: 27 Copynumber: 3.7 Consensus size: 27
54126 AGAGAACTAT
54136 TGAAATAGTGGGAACTATTCACGATAG
1 TGAAATAGTGGGAACTATTCACGATAG
54163 TGAAATAGTGGGAACTATTCACGATAG
1 TGAAATAGTGGGAACTATTCACGATAG
54190 TGAAATAGTGGGAACTATTCACGATAG
1 TGAAATAGTGGGAACTATTCACGATAG
*
54217 TGAAATAGTGGGAGCTAT
1 TGAAATAGTGGGAACTAT
54235 CCGTAAAAGA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.36, C:0.10, G:0.27, T:0.26
Consensus pattern (27 bp):
TGAAATAGTGGGAACTATTCACGATAG
Found at i:63845 original size:20 final size:20
Alignment explanation
Indices: 63815--63870 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
63805 TGCATTTTAA
63815 TAATGGCATCCTTTCAAGCCC
1 TAAT-GCATCCTTTCAAGCCC
* *
63836 TAATGCATCCTTTCATGCCT
1 TAATGCATCCTTTCAAGCCC
63856 TAATGCATCCTTTCA
1 TAATGCATCCTTTCA
63871 TGCATTTTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
20 29 0.88
21 4 0.12
ACGTcount: A:0.23, C:0.30, G:0.11, T:0.36
Consensus pattern (20 bp):
TAATGCATCCTTTCAAGCCC
Found at i:63873 original size:66 final size:66
Alignment explanation
Indices: 63796--63919 Score: 185
Period size: 66 Copynumber: 1.9 Consensus size: 66
63786 ATTAATATGT
* *
63796 ATCCGTTCATGCATTTTAATAATGGCATCCTTTCAAGCCCTAATGCATCCTTTCATGCCTTAATG
1 ATCCGTTCATGCATTTTAATAATGACATCCTTTCAAGCCCTAATGCATACTTTCATGCCTTAATG
63861 C
66 C
* * * * *
63862 ATCCTTTCATGCATTTTAGTTATGACATCCTTTCATGCCTTAATGCATACTTTCATGC
1 ATCCGTTCATGCATTTTAATAATGACATCCTTTCAAGCCCTAATGCATACTTTCATGC
63920 ATTTTAGCTA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 51 1.00
ACGTcount: A:0.23, C:0.26, G:0.11, T:0.40
Consensus pattern (66 bp):
ATCCGTTCATGCATTTTAATAATGACATCCTTTCAAGCCCTAATGCATACTTTCATGCCTTAATG
C
Found at i:63891 original size:46 final size:46
Alignment explanation
Indices: 63841--64069 Score: 361
Period size: 46 Copynumber: 5.0 Consensus size: 46
63831 AGCCCTAATG
63841 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGA
1 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGA
* * *
63887 CATCCTTTCATGCCTTAATGCATACTTTCATGCATTTTAGCTATGG
1 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGA
* ** *
63933 CATCCTTTCATGCCTTACTGCATTATTTCATGCATTTTAGTTATGG
1 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGA
63979 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGA
1 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGA
* *
64025 CATCATTTCATGCCTTAATGCATCATTTCACT-CATTTTAGTTATG
1 CATCCTTTCATGCCTTAATGCATCCTTTCA-TGCATTTTAGTTATG
64070 GATTCGGTTT
Statistics
Matches: 169, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 168 0.99
47 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.11, T:0.44
Consensus pattern (46 bp):
CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGA
Found at i:63897 original size:26 final size:24
Alignment explanation
Indices: 63838--64037 Score: 135
Period size: 20 Copynumber: 8.7 Consensus size: 24
63828 TCAAGCCCTA
*
63838 ATGCATCCTTTCATGC--CTTA--
1 ATGCATCCTTTCATGCATTTTAGT
63858 ATGCATCCTTTCATGCATTTTAGTT
1 ATGCATCCTTTCATGCATTTTAG-T
*
63883 ATGACATCCTTTCATGC--CTTA--
1 ATG-CATCCTTTCATGCATTTTAGT
*
63904 ATGCATACTTTCATGCATTTTAGCT
1 ATGCATCCTTTCATGCATTTTAG-T
*
63929 ATGGCATCCTTTCATGC--CTTA--
1 AT-GCATCCTTTCATGCATTTTAGT
* **
63950 CTGCATTATTTCATGCATTTTAGTT
1 ATGCATCCTTTCATGCATTTTAG-T
*
63975 ATGGCATCCTTTCATGC--CTTA--
1 AT-GCATCCTTTCATGCATTTTAGT
63996 ATGCATCCTTTCATGCATTTTAGTT
1 ATGCATCCTTTCATGCATTTTAG-T
*
64021 ATGACATCATTTCATGC
1 ATG-CATCCTTTCATGC
64038 CTTAATGCAT
Statistics
Matches: 140, Mismatches: 16, Indels: 42
0.71 0.08 0.21
Matches are distributed among these distances:
20 54 0.39
21 6 0.04
22 12 0.09
24 9 0.06
25 9 0.06
26 50 0.36
ACGTcount: A:0.21, C:0.23, G:0.12, T:0.43
Consensus pattern (24 bp):
ATGCATCCTTTCATGCATTTTAGT
Found at i:70956 original size:46 final size:46
Alignment explanation
Indices: 70888--71321 Score: 609
Period size: 46 Copynumber: 9.4 Consensus size: 46
70878 TATATACATG
* * * *
70888 TTCATGCATTTTAATCAGGGCATCCTTTCATGCCCTAATGCATCCT
1 TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCT
* * * *
70934 TTCATGTATTTTAGTTATGGCATTCTTTCATGCCTTAAAGCATCAT
1 TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCT
* * *
70980 TTCATGCATTTTAGTTACGTCATCCTTTCATACCTTAATGCA-CCAT
1 TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCC-T
* *
71026 TTCATACATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCTT
1 TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCT
*
71072 TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCTT
1 TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCT
* ** *
71118 TTCATGCATTTTAGTTATGGCATCCTTTCATACGATAATGCATCAT
1 TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCT
* * *
71164 TTCATGCATTTTAGTTATGGAATCCTTTCATACCTTAATACATCCT
1 TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCT
*
71210 TTCATGCATTTTAGTTATGACATCCTTTCATGCCTTAATGCATCCT
1 TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCT
* * * *
71256 TTCATGCATTTTAGTTATGGTATCCTTCCATGCCTTAATACATCAT
1 TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCT
*
71302 TTCATACATTTTAGTTATGG
1 TTCATGCATTTTAGTTATGG
71322 ATTCGATTTA
Statistics
Matches: 346, Mismatches: 40, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.00
46 344 0.99
47 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.12, T:0.43
Consensus pattern (46 bp):
TTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCT
Found at i:71074 original size:20 final size:20
Alignment explanation
Indices: 71045--71262 Score: 103
Period size: 20 Copynumber: 9.7 Consensus size: 20
71035 TTTAGTTATG
71045 GCATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
* *
71065 GCATCTTTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
71090 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
* *
71111 GCATCTTTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
* **
71136 GGCATCCTTTCATACGATAAT
1 -GCATCCTTTCATGCCTTAAT
* *
71157 GCATCATTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
* *
71182 GGAATCCTTTCATACCTTAAT
1 -GCATCCTTTCATGCCTTAAT
* *
71203 ACATCCTTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
71228 GACATCCTTTCATGCCTTAAT
1 G-CATCCTTTCATGCCTTAAT
71249 GCATCCTTTCATGC
1 GCATCCTTTCATGC
71263 ATTTTAGTTA
Statistics
Matches: 150, Mismatches: 24, Indels: 48
0.68 0.11 0.22
Matches are distributed among these distances:
20 62 0.41
21 9 0.06
22 11 0.07
24 11 0.07
25 8 0.05
26 49 0.33
ACGTcount: A:0.22, C:0.23, G:0.11, T:0.43
Consensus pattern (20 bp):
GCATCCTTTCATGCCTTAAT
Found at i:76111 original size:2 final size:2
Alignment explanation
Indices: 76106--76132 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76096 CTGCAAAAAA
76106 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
76133 GACGATATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:81829 original size:37 final size:35
Alignment explanation
Indices: 81694--81947 Score: 217
Period size: 36 Copynumber: 6.9 Consensus size: 35
81684 TTTTTTTATT
* *
81694 TATATATTATATAATTTTGAAAACATTTTG-AAA-A
1 TATATAATATAT-ATTTTTAAAACATTTTGAAAAGA
* * *
81728 TATATGATATATAGTTTTTAAAACATTTTAAAAACA
1 TATATAATATATA-TTTTTAAAACATTTTGAAAAGA
* * * *
81764 TTTATATTATATAGTTTTAAAACGTTTTTGAAAAGA
1 TATATAATATATATTTTTAAAAC-ATTTTGAAAAGA
* *
81800 AATATAATATATATTTTTCAAAACATTTTTGAAAATA
1 TATATAATATATATTTTT-AAAACA-TTTTGAAAAGA
* * *
81837 TATATATTATATAGTTTTTAAAACGTTTTGAAAATTAA
1 TATATAATATATA-TTTTTAAAACATTTTGAAAA--GA
81875 TATATAATATATAATTTTTTGAAAAACATTTTG-AAAGCA
1 TATATAATATAT-A-TTTTT--AAAACATTTTGAAAAG-A
* *
81914 TATATAATATGTAATTTTTAAAACATTTTTAAAA
1 TATATAATATAT-ATTTTTAAAACATTTTGAAAA
81948 ATTATATGGT
Statistics
Matches: 179, Mismatches: 27, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
33 1 0.01
34 24 0.13
35 12 0.07
36 53 0.30
37 34 0.19
38 22 0.12
39 20 0.11
40 3 0.02
41 10 0.06
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.44
Consensus pattern (35 bp):
TATATAATATATATTTTTAAAACATTTTGAAAAGA
Found at i:82005 original size:31 final size:31
Alignment explanation
Indices: 81933--81997 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
81923 TGTAATTTTT
*
81933 AAAACATTTTTAAAAATTATATGGTTTTTAA
1 AAAACATTTTTAAAAATTATATAGTTTTTAA
* *
81964 AAAACATTTTTGAAAATTATATAGTTTTTTA
1 AAAACATTTTTAAAAATTATATAGTTTTTAA
81995 AAA
1 AAA
81998 TGTTTTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.45
Consensus pattern (31 bp):
AAAACATTTTTAAAAATTATATAGTTTTTAA
Found at i:82086 original size:3 final size:3
Alignment explanation
Indices: 82078--82137 Score: 56
Period size: 3 Copynumber: 20.7 Consensus size: 3
82068 GTTTTTATAT
* *
82078 TTA TTA TTA TTA TTA TTA TGA TTA TTTA TTA TTA TT- TT- TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
82122 CTTA TT- TTA TT- TTA TT
1 -TTA TTA TTA TTA TTA TT
82138 TTTTCCCGTT
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
2 8 0.17
3 35 0.73
4 5 0.10
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:82104 original size:25 final size:24
Alignment explanation
Indices: 82075--82141 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 24
82065 ATAGTTTTTA
*
82075 TATTTATTATTATTATTATTATGA-T
1 TATTTATTATTATT-TT-TTATCACT
82100 TATTTATTATTATTTTTTATCACT
1 TATTTATTATTATTTTTTATCACT
82124 TATTTTATT-TTATTTTTT
1 TA-TTTATTATTATTTTTT
82142 CCCGTTTCAG
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
23 5 0.13
24 14 0.36
25 20 0.51
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.70
Consensus pattern (24 bp):
TATTTATTATTATTTTTTATCACT
Found at i:82342 original size:16 final size:15
Alignment explanation
Indices: 82321--82350 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
82311 CCGGCCGAAA
82321 ATCCCGGGACTGACCC
1 ATCCCGGGA-TGACCC
82337 ATCCCGGGATGACC
1 ATCCCGGGATGACC
82351 GGCCTCAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.20, C:0.40, G:0.27, T:0.13
Consensus pattern (15 bp):
ATCCCGGGATGACCC
Found at i:87044 original size:85 final size:83
Alignment explanation
Indices: 86653--87432 Score: 857
Period size: 85 Copynumber: 9.4 Consensus size: 83
86643 GCTCAAGGCC
* * * *
86653 AGAAGGGCTACCTGCCACCAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTT
1 AGAAGGGTTATCTGCCACCAAGACCTTCGAGTTCGACTACGCTCAGCTTCGAGGGCACATCATTT
* *
86717 GCAGTATAGCTTAAGTCG
66 GCAGCATAACTTAAGTCG
* * * * * * * *
86735 AGAAGAGCTATCTGCCA--AAGACCCTT-AAGTTCGATTACACTCAGCTTCAAGGGCATAACATT
1 AGAAGGGTTATCTGCCACCAAGA-CCTTCGAGTTCGACTACGCTCAGCTTCGAGGGCACATCATT
* * * *
86797 TACAGCATAACTCAAGGCT
65 TGCAGCATAACTTAAGTCG
** * * * *
86816 AGAAGGGTTATCTGTTAGCAAAGACCTTTGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATT
1 AGAAGGGTTATCTGCCA-CCAAGACCTTCGAGTTCGACTACGCTCAGCTTCGAGGGCACATCATT
* *
86880 TGTAGAATAACTTAAGTCG
65 TGCAGCATAACTTAAGTCG
* * * *
86899 AGAAGGGCTATCTGCCA--AAGACCCTCGAGTTCGACTACGTTCAGCTTCGAGGGCATATCATTT
1 AGAAGGGTTATCTGCCACCAAGACCTTCGAGTTCGACTACGCTCAGCTTCGAGGGCACATCATTT
86962 GCAGCATAACTTAAGTCG
66 GCAGCATAACTTAAGTCG
* *
86980 AGAAGGGTTATCTGCCAACCAATGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCAT
1 AGAAGGGTTATCTGCC-ACCAA-GACCTTCGAGTTCGACTACGCTCAGCTTCGAGGGCACATCAT
*
87045 TTGCAGCATAACTTAATTCG
64 TTGCAGCATAACTTAAGTCG
* * *
87065 AGAAGGGTTATCTGCCAACCAAAGACATTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCAT
1 AGAAGGGTTATCTGCC-ACC-AAGACCTTCGAGTTCGACTACGCTCAGCTTCGAGGGCACATCAT
*
87130 TTGCAACATAACTTAAGTCG
64 TTGCAGCATAACTTAAGTCG
* * *
87150 AGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGATTACACTCAGCTTCGAGGGCACATCAT
1 AGAAGGGTTATCTGCC-ACC-AAGACCTTCGAGTTCGACTACGCTCAGCTTCGAGGGCACATCAT
* *
87215 TTGCAGCATAGCTTAATTCG
64 TTGCAGCATAACTTAAGTCG
** * *
87235 AGAAGGGTTATCTGCCA--AAGACCCCCGAGTTCGACTACGCTCAGC-TCCAGGGCATATCATTT
1 AGAAGGGTTATCTGCCACCAAGACCTTCGAGTTCGACTACGCTCAGCTTCGAGGGCACATCATTT
* *
87297 GCAGCACAACTTAAGTCT
66 GCAGCATAACTTAAGTCG
* * * * * * *
87315 AGAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTTGACTATGCTCAGC-TCAACGGCACATCAT
1 AGAAGGGTTATCTGCC-AC-CAAGACCTTCGAGTTCGACTACGCTCAGCTTCGAGGGCACATCAT
*
87379 TTGCAGCATAGCTTAAGTCG
64 TTGCAGCATAACTTAAGTCG
* *
87399 AGAAGGGCTATCTGCTA--AAGACCTTCGAGTTCGA
1 AGAAGGGTTATCTGCCACCAAGACCTTCGAGTTCGA
87433 TTATATTCAA
Statistics
Matches: 596, Mismatches: 86, Indels: 34
0.83 0.12 0.05
Matches are distributed among these distances:
80 104 0.17
81 111 0.19
82 16 0.03
83 44 0.07
84 88 0.15
85 231 0.39
86 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.25
Consensus pattern (83 bp):
AGAAGGGTTATCTGCCACCAAGACCTTCGAGTTCGACTACGCTCAGCTTCGAGGGCACATCATTT
GCAGCATAACTTAAGTCG
Found at i:87133 original size:170 final size:165
Alignment explanation
Indices: 86653--87432 Score: 985
Period size: 164 Copynumber: 4.7 Consensus size: 165
86643 GCTCAAGGCC
* * *
86653 AGAAGGGCTACCTGCC-ACC-AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
1 AGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * ** *
86716 TGCAGTATAGCTTAAGTCGAGAAGAGCTATCTGCCAAAGACCCTTAAGTTCGATTACACTCAGCT
66 TGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTACACTCAGCT
* * * * * *
86781 TCAAGGGCATAACATTTACAGCATAACTCAAGGCT
131 TCGAGGGCATATCATTTGCAGCATAACTTAAGTCG
** *
86816 AGAAGGGTTATCTG-TTAGCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
1 AGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * **
86880 TGTAGAATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTACGTTCAGCT
66 TGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTACACTCAGCT
86945 TCGAGGGCATATCATTTGCAGCATAACTTAAGTCG
131 TCGAGGGCATATCATTTGCAGCATAACTTAAGTCG
* * * * * *
86980 AGAAGGGTTATCTGCCAACCAATGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCAT
1 AGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTACGCTCAGC-TCCAAGGCACATCAT
* * * ** *
87045 TTGCAGCATAACTTAATTCGAGAAGGGTTATCTGCCAACCAAAGACATTCGAGTTCGATTACACT
65 TTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG----CCAAAGACCCTCGAGTTCGACTACACT
* *
87110 CAGCTTCGAGGGCACATCATTTGCAACATAACTTAAGTCG
126 CAGCTTCGAGGGCATATCATTTGCAGCATAACTTAAGTCG
* * * *
87150 AGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGATTACACTCAGCTTCGAGGGCACATCAT
1 AGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTACGCTCAGC-TCCAAGGCACATCAT
* * * *
87215 TTGCAGCATAGCTTAATTCGAGAAGGGTTATCTGCCAAAGACCCCCGAGTTCGACTACGCTCAGC
65 TTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTACACTCAGC
* * *
87280 -TCCAGGGCATATCATTTGCAGCACAACTTAAGTCT
130 TTCGAGGGCATATCATTTGCAGCATAACTTAAGTCG
* * * *
87315 AGAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTTGACTATGCTCAGCT-CAACGGCACATCAT
1 AGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAA-GGCACATCAT
* *
87379 TTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCTAAAGACCTTCGAGTTCGA
65 TTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGA
87433 TTATATTCAA
Statistics
Matches: 542, Mismatches: 66, Indels: 17
0.87 0.11 0.03
Matches are distributed among these distances:
163 15 0.03
164 202 0.37
165 100 0.18
166 69 0.13
170 156 0.29
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.25
Consensus pattern (165 bp):
AGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
TGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTACACTCAGCT
TCGAGGGCATATCATTTGCAGCATAACTTAAGTCG
Found at i:88180 original size:37 final size:36
Alignment explanation
Indices: 88045--88298 Score: 237
Period size: 36 Copynumber: 6.9 Consensus size: 36
88035 TTTTTTTATT
* *
88045 TATATATTATATAATTTTGAAAACATTTTG-AAA-A
1 TATATAATATATAATTTTTAAAACATTTTGAAAAGA
* * * *
88079 TATATGATATATAGTTTTTAAAACATTTTAAAAACA
1 TATATAATATATAATTTTTAAAACATTTTGAAAAGA
* * * *
88115 TTTATATTATAT-AGTTTTAAAACGTTTTTGAAAAGA
1 TATATAATATATAATTTTTAAAAC-ATTTTGAAAAGA
* * *
88151 AATATAATATATAATTTTCAAAACATTTTTGAAAATA
1 TATATAATATATAATTTTTAAAACA-TTTTGAAAAGA
* * * *
88188 TATATATTATATAGTTTTTAAAACGTTTTGAAAATTAA
1 TATATAATATATAATTTTTAAAACATTTTGAAAA--GA
88226 TATATAATATATAATTTTTTGAAAAACATTTTG-AAAGCA
1 TATATAATATATAA-TTTTT--AAAACATTTTGAAAAG-A
* *
88265 TATATAATATGTAATTTTTAAAACATTTTTAAAA
1 TATATAATATATAATTTTTAAAACATTTTGAAAA
88299 ATTATATGGT
Statistics
Matches: 176, Mismatches: 32, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
34 25 0.14
35 12 0.07
36 47 0.27
37 42 0.24
38 18 0.10
39 19 0.11
40 3 0.02
41 10 0.06
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (36 bp):
TATATAATATATAATTTTTAAAACATTTTGAAAAGA
Found at i:88363 original size:31 final size:31
Alignment explanation
Indices: 88284--88348 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
88274 TGTAATTTTT
*
88284 AAAACATTTTTAAAAATTATATGGTTTTTAA
1 AAAACATTTTTAAAAATTATATAGTTTTTAA
*
88315 AAAACATTTTTGAAAATTATATAGTTTTTAA
1 AAAACATTTTTAAAAATTATATAGTTTTTAA
88346 AAA
1 AAA
88349 TGTTTTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.43
Consensus pattern (31 bp):
AAAACATTTTTAAAAATTATATAGTTTTTAA
Found at i:88367 original size:32 final size:31
Alignment explanation
Indices: 88284--88369 Score: 109
Period size: 31 Copynumber: 2.7 Consensus size: 31
88274 TGTAATTTTT
* *
88284 AAAACATTTTTAAAAATTATATGGTTTTTAA
1 AAAACATTTTTTAAAATTATATAGTTTTTAA
*
88315 AAAACATTTTTGAAAATTATATAGTTTTTAA
1 AAAACATTTTTTAAAATTATATAGTTTTTAA
***
88346 AAATGTTTTTTTAAAATTTATATA
1 AAAACATTTTTTAAAA-TTATATA
88370 TAATATATAG
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
31 41 0.85
32 7 0.15
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (31 bp):
AAAACATTTTTTAAAATTATATAGTTTTTAA
Found at i:88436 original size:3 final size:3
Alignment explanation
Indices: 88428--88487 Score: 56
Period size: 3 Copynumber: 20.7 Consensus size: 3
88418 GTTTTTATAT
* *
88428 TTA TTA TTA TTA TTA TTA TGA TTA TTTA TTA TTA TT- TT- TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
88472 CTTA TT- TTA TT- TTA TT
1 -TTA TTA TTA TTA TTA TT
88488 TTTTCCCGTT
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
2 8 0.17
3 35 0.73
4 5 0.10
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:88455 original size:25 final size:24
Alignment explanation
Indices: 88425--88491 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 24
88415 ATAGTTTTTA
*
88425 TATTTATTATTATTATTATTATGA-T
1 TATTTATTATTATT-TT-TTATCACT
88450 TATTTATTATTATTTTTTATCACT
1 TATTTATTATTATTTTTTATCACT
88474 TATTTTATT-TTATTTTTT
1 TA-TTTATTATTATTTTTT
88492 CCCGTTTCAG
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
23 5 0.13
24 14 0.36
25 20 0.51
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.70
Consensus pattern (24 bp):
TATTTATTATTATTTTTTATCACT
Found at i:88692 original size:16 final size:15
Alignment explanation
Indices: 88671--88700 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
88661 CCGGCCGAAA
88671 ATCCCGGGACTGACCC
1 ATCCCGGGA-TGACCC
88687 ATCCCGGGATGACC
1 ATCCCGGGATGACC
88701 GGCCTCAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.20, C:0.40, G:0.27, T:0.13
Consensus pattern (15 bp):
ATCCCGGGATGACCC
Found at i:94256 original size:2 final size:2
Alignment explanation
Indices: 94249--94279 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
94239 TCGGCTGAGT
94249 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
94280 TTAAAGGTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:94531 original size:20 final size:20
Alignment explanation
Indices: 94508--94555 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
94498 TTATCTTTGG
*
94508 AGAAAAAGATAAAATAGA-AA
1 AGAAAAAGAT-AAATAAATAA
94528 AGAAAGAA-ATAAATAAATAA
1 AGAAA-AAGATAAATAAATAA
94548 AGAAAAAG
1 AGAAAAAG
94556 GGAAAATGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 8 0.33
20 14 0.58
21 2 0.08
ACGTcount: A:0.75, C:0.00, G:0.15, T:0.10
Consensus pattern (20 bp):
AGAAAAAGATAAATAAATAA
Found at i:98032 original size:15 final size:14
Alignment explanation
Indices: 98012--98050 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
98002 ACCTTATTTC
98012 TCTTTTTTCTTTGGT
1 TCTTTTTTCTTT-GT
*
98027 TCTTTTTCTCTTTTT
1 TCTTTTT-TCTTTGT
98042 TCTTTTTTC
1 TCTTTTTTC
98051 AATTTAGGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 2 0.09
15 15 0.68
16 5 0.23
ACGTcount: A:0.00, C:0.18, G:0.05, T:0.77
Consensus pattern (14 bp):
TCTTTTTTCTTTGT
Found at i:98038 original size:8 final size:7
Alignment explanation
Indices: 98012--98050 Score: 51
Period size: 7 Copynumber: 5.3 Consensus size: 7
98002 ACCTTATTTC
98012 TCTTTTT
1 TCTTTTT
*
98019 TCTTTGGT
1 TCTTT-TT
98027 TCTTTTT
1 TCTTTTT
98034 CTCTTTTT
1 -TCTTTTT
98042 TCTTTTT
1 TCTTTTT
98049 TC
1 TC
98051 AATTTAGGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 15 0.54
8 13 0.46
ACGTcount: A:0.00, C:0.18, G:0.05, T:0.77
Consensus pattern (7 bp):
TCTTTTT
Found at i:108542 original size:15 final size:17
Alignment explanation
Indices: 108523--108559 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
108513 AAAAATAACC
108523 TAATAAATATA-ATTAA
1 TAATAAATATATATTAA
*
108539 -AATATATATATATTAA
1 TAATAAATATATATTAA
108555 TAATA
1 TAATA
108560 GGTATACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 9 0.50
16 5 0.28
17 4 0.22
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATAAATATATATTAA
Found at i:108611 original size:17 final size:16
Alignment explanation
Indices: 108565--108613 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 16
108555 TAATAGGTAT
108565 ACAAAATAAATATATA
1 ACAAAATAAATATATA
**
108581 A-AAAATGTATATATA
1 ACAAAATAAATATATA
108596 ACAAAATAAATAATATA
1 ACAAAATAAAT-ATATA
108613 A
1 A
108614 ATAATAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 13 0.48
16 8 0.30
17 6 0.22
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (16 bp):
ACAAAATAAATATATA
Found at i:116293 original size:19 final size:19
Alignment explanation
Indices: 116271--116314 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
116261 TTCTTCTTAT
116271 GAAACATAATCCTCAAAAA
1 GAAACATAATCCTCAAAAA
116290 GAAACATAATCCTCAAAAA
1 GAAACATAATCCTCAAAAA
116309 GAAACA
1 GAAACA
116315 AAAAAAATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.59, C:0.20, G:0.07, T:0.14
Consensus pattern (19 bp):
GAAACATAATCCTCAAAAA
Found at i:119484 original size:42 final size:42
Alignment explanation
Indices: 119437--119520 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
119427 CCCGAAATCT
*
119437 CGTGTTTGTTTCACGTAATTCGTTTTCCGAAAAATATTTTCC
1 CGTGTTTATTTCACGTAATTCGTTTTCCGAAAAATATTTTCC
* ** *
119479 CGTGTTTATTTCATGTAATTCGTTTTTTGAAAAATGTTTTCC
1 CGTGTTTATTTCACGTAATTCGTTTTCCGAAAAATATTTTCC
119521 AATGTTTGAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.21, C:0.15, G:0.14, T:0.49
Consensus pattern (42 bp):
CGTGTTTATTTCACGTAATTCGTTTTCCGAAAAATATTTTCC
Found at i:119778 original size:22 final size:22
Alignment explanation
Indices: 119758--119804 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
119748 TAAATATATT
119758 TATTAATATTTCTAATAATATAA
1 TATT-ATATTTCTAATAATATAA
*
119781 TATTATATTTTTAATAATATAA
1 TATTATATTTCTAATAATATAA
119803 TA
1 TA
119805 AAATAATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
TATTATATTTCTAATAATATAA
Found at i:119964 original size:27 final size:27
Alignment explanation
Indices: 119884--119969 Score: 70
Period size: 27 Copynumber: 3.1 Consensus size: 27
119874 AATAAAATTT
* *
119884 ATATTATTTAT-TAATTTCATAGAAATA
1 ATATTATTTATAT-ATTTAATATAAATA
* *
119911 ATATTA-TTAAAT-TATTAATAATGAATA
1 ATATTATTTATATAT-TTAAT-ATAAATA
119938 ATATTATTTATATATTTAATATTAATATA
1 ATATTATTTATATATTTAATA-TAA-ATA
119967 ATA
1 ATA
119970 ATCTAATAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
25 1 0.02
26 7 0.15
27 19 0.41
28 12 0.26
29 7 0.15
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (27 bp):
ATATTATTTATATATTTAATATAAATA
Found at i:120152 original size:27 final size:26
Alignment explanation
Indices: 120122--120198 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 26
120112 ATTATAAAAA
120122 TAATATTTAATAATAAATAAATTATTT
1 TAATATTT-ATAATAAATAAATTATTT
* *
120149 TAATATTT-TAA-AAAT-AATAATAT
1 TAATATTTATAATAAATAAATTATTT
*
120172 TAA-ATTTTATGATAAATAATATTATTT
1 TAATA-TTTATAATAAATAA-ATTATTT
120199 ATTGTATTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
22 1 0.03
23 12 0.30
24 6 0.15
25 7 0.17
26 1 0.03
27 13 0.32
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (26 bp):
TAATATTTATAATAAATAAATTATTT
Found at i:120386 original size:14 final size:14
Alignment explanation
Indices: 120367--120425 Score: 73
Period size: 14 Copynumber: 4.1 Consensus size: 14
120357 CTTGAAATGT
*
120367 AATTCATTTTCCAG
1 AATTCAATTTCCAG
*
120381 AATTCAAATTCCAG
1 AATTCAATTTCCAG
* *
120395 TAATTCATTTTTCAG
1 -AATTCAATTTCCAG
120410 AATTCAATTTCCAG
1 AATTCAATTTCCAG
120424 AA
1 AA
120426 AACCAATTAC
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
14 26 0.70
15 11 0.30
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.39
Consensus pattern (14 bp):
AATTCAATTTCCAG
Found at i:120410 original size:29 final size:29
Alignment explanation
Indices: 120365--120423 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
120355 TTCTTGAAAT
120365 GTAATTCATTTTCCAGAATTCAAATTCCA
1 GTAATTCATTTTCCAGAATTCAAATTCCA
* *
120394 GTAATTCATTTTTCAGAATTCAATTTCCA
1 GTAATTCATTTTCCAGAATTCAAATTCCA
120423 G
1 G
120424 AAAACCAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.41
Consensus pattern (29 bp):
GTAATTCATTTTCCAGAATTCAAATTCCA
Found at i:120508 original size:14 final size:15
Alignment explanation
Indices: 120461--120512 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
120451 TACTATAATT
120461 TGAATTACTGGAAAA
1 TGAATTACTGGAAAA
**
120476 TGAATTACTGGAATT
1 TGAATTACTGGAAAA
*
120491 TGAATT-TTGGAAAA
1 TGAATTACTGGAAAA
120505 TGAATTAC
1 TGAATTAC
120513 ATTTCTAGAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.40, C:0.06, G:0.19, T:0.35
Consensus pattern (15 bp):
TGAATTACTGGAAAA
Found at i:120972 original size:28 final size:30
Alignment explanation
Indices: 120921--121032 Score: 94
Period size: 29 Copynumber: 3.8 Consensus size: 30
120911 ATATCTTTAG
*
120921 ATTATTATAT-TAATATTAAATATATAAATA
1 ATTATTATATAT-TTATTAAATATATAAATA
*
120951 A-TATTAT-TCA-TTATTAAATATATAAAAA
1 ATTATTATAT-ATTTATTAAATATATAAATA
*
120979 ATTATTATATATTTATTAAA-ATAAAAATA
1 ATTATTATATATTTATTAAATATATAAATA
*
121008 TAATATCT-TATA-TTATTATAATATA
1 -ATTAT-TATATATTTATTA-AATATA
121033 ATTGATTATT
Statistics
Matches: 68, Mismatches: 5, Indels: 17
0.76 0.06 0.19
Matches are distributed among these distances:
28 18 0.26
29 26 0.38
30 20 0.29
31 4 0.06
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (30 bp):
ATTATTATATATTTATTAAATATATAAATA
Found at i:121066 original size:14 final size:14
Alignment explanation
Indices: 121047--121096 Score: 55
Period size: 16 Copynumber: 3.3 Consensus size: 14
121037 ATTATTTTAT
121047 TATAATATTAAAAA
1 TATAATATTAAAAA
*
121061 TATAATATTATAATAT
1 TATAATATTA-AA-AA
121077 TATAACTATTAATAAA
1 TATAA-TATTAA-AAA
121093 TATA
1 TATA
121097 TTTTAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
14 10 0.33
15 2 0.07
16 12 0.40
17 6 0.20
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (14 bp):
TATAATATTAAAAA
Found at i:121078 original size:30 final size:29
Alignment explanation
Indices: 121044--121120 Score: 93
Period size: 30 Copynumber: 2.6 Consensus size: 29
121034 TTGATTATTT
121044 TATTATAATATTAA-AAATATAATATTATAA
1 TATTATAATATTAATAAATAT-ATATTA-AA
*
121074 TATTATAACTATTAATAAATATATTTTAAA
1 TATTATAA-TATTAATAAATATATATTAAA
*
121104 TATTTTAATAATTAATA
1 TATTATAAT-ATTAATA
121121 TTTTGATGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
29 1 0.02
30 24 0.57
31 11 0.26
32 6 0.14
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (29 bp):
TATTATAATATTAATAAATATATATTAAA
Found at i:121080 original size:8 final size:8
Alignment explanation
Indices: 121044--121087 Score: 56
Period size: 8 Copynumber: 5.6 Consensus size: 8
121034 TTGATTATTT
121044 TATTATAA
1 TATTATAA
121052 TATTA-AA
1 TATTATAA
*
121059 -AATATAA
1 TATTATAA
121066 TATTATAA
1 TATTATAA
121074 TATTATAA
1 TATTATAA
121082 CTATTA
1 -TATTA
121088 ATAAATATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
6 3 0.10
7 4 0.13
8 19 0.61
9 5 0.16
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (8 bp):
TATTATAA
Found at i:121806 original size:35 final size:34
Alignment explanation
Indices: 121758--121868 Score: 132
Period size: 35 Copynumber: 3.2 Consensus size: 34
121748 AAAATAGTCC
* *
121758 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAA-AAAT
* *
121793 TTAATTTCATTCTAAACCCTAAATTCCAAAAAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAAAAT
** * *
121827 TCAATTAAATTCTAAACCCCAAATTCTAAAATACT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAA-AAT
121862 TCAATTT
1 TCAATTT
121869 AAGGTTGTTG
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
34 29 0.45
35 35 0.55
ACGTcount: A:0.41, C:0.23, G:0.01, T:0.35
Consensus pattern (34 bp):
TCAATTTCATTCTAAACCCCAAATTCCAAAAAAT
Found at i:121844 original size:34 final size:34
Alignment explanation
Indices: 121766--121867 Score: 114
Period size: 34 Copynumber: 2.9 Consensus size: 34
121756 CCTCAATTTC
* * * **
121766 ATTCTAAACCCCAATTTCCAAAGTAATTTAATTTC
1 ATTCTAAACCCCAAATTCCAAA-AAATTCAATTAA
*
121801 ATTCTAAACCCTAAATTCCAAAAAATTCAATTAA
1 ATTCTAAACCCCAAATTCCAAAAAATTCAATTAA
* *
121835 ATTCTAAACCCCAAATTCTAAAATACTTCAATT
1 ATTCTAAACCCCAAATTCCAAAA-AATTCAATT
121868 TAAGGTTGTT
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
34 29 0.51
35 28 0.49
ACGTcount: A:0.43, C:0.23, G:0.01, T:0.33
Consensus pattern (34 bp):
ATTCTAAACCCCAAATTCCAAAAAATTCAATTAA
Found at i:126996 original size:18 final size:18
Alignment explanation
Indices: 126970--127013 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
126960 GTGTTTGCTT
*
126970 ATGTGCTAGATTTCAATC
1 ATGTCCTAGATTTCAATC
126988 ATGTCCTAGATTTCAATC
1 ATGTCCTAGATTTCAATC
127006 ATGTCCTA
1 ATGTCCTA
127014 AGAAATCACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (18 bp):
ATGTCCTAGATTTCAATC
Found at i:127868 original size:22 final size:20
Alignment explanation
Indices: 127842--127899 Score: 73
Period size: 19 Copynumber: 2.9 Consensus size: 20
127832 ATAAGGCAGA
127842 GGGAATCGATACCCCCTTGAAG
1 GGGAATCGATACCCCCTT--AG
* *
127864 GGGAACCGATTCCCCC-TAG
1 GGGAATCGATACCCCCTTAG
127883 GGGAATCGATACCCCCT
1 GGGAATCGATACCCCCT
127900 GGGGGTTCTG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
19 16 0.52
21 1 0.03
22 14 0.45
ACGTcount: A:0.24, C:0.33, G:0.26, T:0.17
Consensus pattern (20 bp):
GGGAATCGATACCCCCTTAG
Found at i:131375 original size:35 final size:35
Alignment explanation
Indices: 131314--131381 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
131304 ACTCAACAAA
* * *
131314 GGTTTAGAATGTAATTGAATTATTTTGGAATTTAG
1 GGTTTAGAATGAAATTGAAGTATTTTGAAATTTAG
*
131349 GGTTTAGAATGAAATT-AAGGTGTTTTGAAATTT
1 GGTTTAGAATGAAATTGAA-GTATTTTGAAATTT
131382 TGAACATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 2 0.07
35 26 0.93
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (35 bp):
GGTTTAGAATGAAATTGAAGTATTTTGAAATTTAG
Found at i:133058 original size:6 final size:6
Alignment explanation
Indices: 133047--133076 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
133037 AATTTCTTGC
133047 TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG
1 TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG
133077 AGTTCCCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.67
Consensus pattern (6 bp):
TTTTAG
Found at i:133783 original size:40 final size:40
Alignment explanation
Indices: 133727--133807 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
133717 TTTTGATAAT
*
133727 TCTCTTTTCACCAGAACAAGCTGAAAGAAGAATACAAACC
1 TCTCTTTTCACCAGAACAAGCTGAAAGAAGAATAAAAACC
* *
133767 TCTCTTTTCACTAGAACAAGCTGGAAGAAGAATAAAAACC
1 TCTCTTTTCACCAGAACAAGCTGAAAGAAGAATAAAAACC
133807 T
1 T
133808 TGGGACCATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.22
Consensus pattern (40 bp):
TCTCTTTTCACCAGAACAAGCTGAAAGAAGAATAAAAACC
Found at i:134393 original size:3 final size:3
Alignment explanation
Indices: 134385--134499 Score: 171
Period size: 3 Copynumber: 38.7 Consensus size: 3
134375 TCATTTAAAT
** *
134385 TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA TTA GTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
134433 TTA TAA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
134479 TTA TTA -TA TT- TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
134500 TAATAAATAA
Statistics
Matches: 101, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
2 4 0.04
3 94 0.93
4 3 0.03
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:135930 original size:27 final size:28
Alignment explanation
Indices: 135870--135938 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
135860 TAATTACAAG
* *
135870 TTTTATTACTT-TTTATATTTAGTTTTAA
1 TTTTATTA-TTGTTTAAATATAGTTTTAA
135898 TTTTATTATTGTTTAAATATA-TTTTAA
1 TTTTATTATTGTTTAAATATAGTTTTAA
135925 TTTTA-TA-TGTTTAA
1 TTTTATTATTGTTTAA
135939 TATTTTAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
25 7 0.18
26 2 0.05
27 13 0.34
28 16 0.42
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.65
Consensus pattern (28 bp):
TTTTATTATTGTTTAAATATAGTTTTAA
Found at i:135944 original size:22 final size:26
Alignment explanation
Indices: 135870--135957 Score: 78
Period size: 28 Copynumber: 3.4 Consensus size: 26
135860 TAATTACAAG
*
135870 TTTTATTACTT-TTTATATTTAGTTTTAA
1 TTTTATTA-TTGTTTA-ATATA-TTTTAA
135898 TTTTATTATTGTTTAAATATATTTTAA
1 TTTTATTATTGTTT-AATATATTTTAA
135925 TTTTA-TA-TGTTT-A-ATATTTTAA
1 TTTTATTATTGTTTAATATATTTTAA
*
135947 TTAGTATTATT
1 TT-TTATTATT
135958 ATTTTATTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
22 11 0.21
23 3 0.06
24 2 0.04
25 6 0.11
26 2 0.04
27 13 0.25
28 15 0.28
29 1 0.02
ACGTcount: A:0.30, C:0.01, G:0.05, T:0.65
Consensus pattern (26 bp):
TTTTATTATTGTTTAATATATTTTAA
Found at i:135972 original size:23 final size:22
Alignment explanation
Indices: 135939--135983 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
135929 ATATGTTTAA
*
135939 TATTTTAATTAGTATTATTATTT
1 TATTTTAATTAATA-TATTATTT
*
135962 TATTTTTATTAATATATTATTT
1 TATTTTAATTAATATATTATTT
135984 GATTAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (22 bp):
TATTTTAATTAATATATTATTT
Found at i:136738 original size:20 final size:21
Alignment explanation
Indices: 136715--136765 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
136705 AGAAATTAAA
136715 AATTCATTTATTT-AATTTTT
1 AATTCATTTATTTAAATTTTT
* *
136735 AATTCTTTTCTTTCAAATTTTT
1 AATTCATTTATTT-AAATTTTT
136757 -ATT-ATTTAT
1 AATTCATTTAT
136766 ATTTTTATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 15 0.60
21 3 0.12
22 7 0.28
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (21 bp):
AATTCATTTATTTAAATTTTT
Found at i:142892 original size:82 final size:83
Alignment explanation
Indices: 142682--143087 Score: 598
Period size: 83 Copynumber: 4.8 Consensus size: 83
142672 ATAGTAGAAA
* * *
142682 TTGGAAGATGAATATGCTCATAGCATCTTATGGAAGTGTTCTTTGAATTATCTGATCTGGTTTGC
1 TTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
* *
142747 CAAAATCAATCATTGAAT
66 CATAACCAATCATTGAAT
* *
142765 TTGGAATATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATATGGTTTGG
1 TTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
142830 CATAACCAATCATTGAA-
66 CATAACCAATCATTGAAT
142847 TTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
1 TTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
*
142912 CAGAACCAATCATTGAAT
66 CATAACCAATCATTGAAT
*
142930 TTGGAAGATGAATATGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
1 TTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
*
142995 TATAAAACCACAGAATCAATCATTGAAT
66 CAT---A--AC-----CAATCATTGAAT
* * *
143023 TTGGAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATCTGATTTGG
1 TTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
143088 TATGAACTCC
Statistics
Matches: 295, Mismatches: 17, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
82 79 0.27
83 140 0.47
86 1 0.00
88 2 0.01
93 73 0.25
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.37
Consensus pattern (83 bp):
TTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
CATAACCAATCATTGAAT
Found at i:142953 original size:165 final size:168
Alignment explanation
Indices: 142680--143087 Score: 624
Period size: 165 Copynumber: 2.4 Consensus size: 168
142670 TCATAGTAGA
*
142680 AATTGGAAGATGAATATGCTCATAGCATCTTATGGAAGTGTTCTTTGAATTATCTGATCTGGTTT
1 AATTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATCTGGTTT
* * *
142745 GCCAAAATCAATCATTGAATTTGGAATATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTG
66 GGCAAAACCAATCATTGAATTTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTG
142810 AGTTATCTGATATGGTTTGGCAT-A-AC-CAATCATTG
131 AGTTATCTGATATGGTTTGGCATAACACACAATCATTG
*
142845 AATTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
1 AATTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATCTGGTTT
* *
142910 GGCAGAACCAATCATTGAATTTGGAAGATGAATATGTTCATAGCATCTTCTGGAAGTGTTCTTTG
66 GGCAAAACCAATCATTGAATTTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTG
* *
142975 AGTTATCTGATCTGGTTTGGTATAAAACCACAGAATCAATCATTG
131 AGTTATCTGATATGGTTTGGCAT--AA-CAC---A-CAATCATTG
* *
143020 AATTTGGAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATCTGATT
1 AA-TTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATCTGGTT
143085 TGG
65 TGG
143088 TATGAACTCC
Statistics
Matches: 220, Mismatches: 12, Indels: 11
0.91 0.05 0.05
Matches are distributed among these distances:
165 144 0.65
168 1 0.00
170 2 0.01
175 11 0.05
176 62 0.28
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.37
Consensus pattern (168 bp):
AATTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATCTGGTTT
GGCAAAACCAATCATTGAATTTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTG
AGTTATCTGATATGGTTTGGCATAACACACAATCATTG
Found at i:143074 original size:93 final size:90
Alignment explanation
Indices: 142682--143138 Score: 571
Period size: 83 Copynumber: 5.3 Consensus size: 90
142672 ATAGTAGAAA
* *
142682 TTGGAAGATGAATATGCTCATAGCATCTTATGGAAGTGTTCTTTGAATTATCTGATCTGGTTT-G
1 TTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
*
142746 ------CCAAAATCAATCATTGAAT
66 TATAACCCAGAATCAATCATTGAAT
* *
142765 TTGGAATATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATATGGTTTGG
1 TTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
*
142830 CATAA--C-----CAATCATTGAA-
66 TATAACCCAGAATCAATCATTGAAT
142847 TTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
1 TTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
*
142912 -------CAGAACCAATCATTGAAT
66 TATAACCCAGAATCAATCATTGAAT
*
142930 TTGGAAGATGAATATGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
1 TTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
142995 TATAAAACCACAGAATCAATCATTGAAT
66 TAT--AACC-CAGAATCAATCATTGAAT
* * *
143023 TTGGAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATCTGATTTGG
1 TTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
* *
143088 TATGAACTCCAAAATCAATCATTGGAT
66 TAT-AAC-CCAGAATCAATCATTGAAT
* *
143115 TTGAAAGATGAATTTTGCTCATAG
1 TTGGAAGATGAA-TATGCTCATAG
143139 TAGAAATAAG
Statistics
Matches: 333, Mismatches: 17, Indels: 38
0.86 0.04 0.10
Matches are distributed among these distances:
77 1 0.00
82 74 0.22
83 134 0.40
84 1 0.00
88 1 0.00
92 30 0.09
93 92 0.28
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (90 bp):
TTGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
TATAACCCAGAATCAATCATTGAAT
Found at i:144433 original size:74 final size:75
Alignment explanation
Indices: 144341--144512 Score: 213
Period size: 74 Copynumber: 2.3 Consensus size: 75
144331 ATTAACAAGA
* * *
144341 AGCAAATATTGGGGCATGCTGAAAACCCTTTTCAAACAGAATCAGAAATGTTGAAATATTCTGAA
1 AGCAAATGTTGGGGCATGCTGAAAACCCGTTTCAAACAGAATCAGAAATGTTGAAACATTCTGAA
*
144406 TA-TT-TATC
66 CACTTGTATC
* * * ** *
144414 AGCAAAATGTTGGGGCATGCTGAAAACTCGTTTCAATCAGAATCAGAACTGTTGATGCATTTTGA
1 AGC-AAATGTTGGGGCATGCTGAAAACCCGTTTCAAACAGAATCAGAAATGTTGAAACATTCTGA
*
144479 ACACTTGTATT
65 ACACTTGTATC
*
144490 AGCCAATGTTGGGGCATGCTGAA
1 AGCAAATGTTGGGGCATGCTGAA
144513 GGCCCACAAT
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
73 3 0.04
74 54 0.64
75 21 0.25
76 6 0.07
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (75 bp):
AGCAAATGTTGGGGCATGCTGAAAACCCGTTTCAAACAGAATCAGAAATGTTGAAACATTCTGAA
CACTTGTATC
Found at i:145878 original size:22 final size:22
Alignment explanation
Indices: 145849--145903 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
145839 ATCTACACTC
145849 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
145871 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
145893 TTCAAAGATGA
1 TTCAAAGATGA
145904 AAGCTTTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:146749 original size:88 final size:88
Alignment explanation
Indices: 146600--146859 Score: 493
Period size: 88 Copynumber: 3.0 Consensus size: 88
146590 CCTTCAGTGC
146600 ATGATGTTTCCAAAAAGCCTTCGGGAACTTTTTGATGTTTTCAAAGCCTTCGGGTCATCTGTAAG
1 ATGATGTTTCCAAAAAGCCTTCGGGAACTTTTTGATGTTTTCAAAGCCTTCGGGTCATCTGTAAG
146665 TCCTTCAGTGCATGATGTTAAAA
66 TCCTTCAGTGCATGATGTTAAAA
* *
146688 ATGATATTTCCAAAAAGCCTTCAGGAACTTTTTGATGTTTTCAAAGCCTTCGGGTCATCTGTAAG
1 ATGATGTTTCCAAAAAGCCTTCGGGAACTTTTTGATGTTTTCAAAGCCTTCGGGTCATCTGTAAG
146753 TCCTTCAGTGCATGATGTTAAAA
66 TCCTTCAGTGCATGATGTTAAAA
146776 ATGATGTTTCCAAAAAGCCTTCGGGAACTTTTTGATGTTTTCAAAGCCTTCGGGTCATCTGTAAG
1 ATGATGTTTCCAAAAAGCCTTCGGGAACTTTTTGATGTTTTCAAAGCCTTCGGGTCATCTGTAAG
*
146841 CCCTTCAGTGCATGATGTT
66 TCCTTCAGTGCATGATGTT
146860 TTCAAAACCT
Statistics
Matches: 167, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
88 167 1.00
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (88 bp):
ATGATGTTTCCAAAAAGCCTTCGGGAACTTTTTGATGTTTTCAAAGCCTTCGGGTCATCTGTAAG
TCCTTCAGTGCATGATGTTAAAA
Found at i:146857 original size:45 final size:45
Alignment explanation
Indices: 146808--146966 Score: 239
Period size: 45 Copynumber: 3.5 Consensus size: 45
146798 GGGAACTTTT
* *
146808 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCA
146853 TGATGTTTTCAAAACCTGT-GGGTCATCTGTAAGTCCTTCAGTGCA
1 TGATGTTTTCAAAACCT-TCGGGTCATCTGTAAGTCCTTCAGTGCA
* *
146898 TGATGTTTTCAAAACCTGCGGGTCATCTGTAAGTCCTTCAGTACA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCA
*
146943 TGATGTTTCCAAAAAGCCTTCGGG
1 TGATGTTTTC-AAAA-CCTTCGGG
146967 AGCTTTTTGA
Statistics
Matches: 104, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
45 92 0.88
46 5 0.05
47 7 0.07
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCA
Found at i:147024 original size:76 final size:76
Alignment explanation
Indices: 146898--147939 Score: 1784
Period size: 76 Copynumber: 13.7 Consensus size: 76
146888 CTTCAGTGCA
* *
146898 TGATGTTTTCAAAACCTGCGGGTCATCTGTAAGTCCTTCAGTACATGATGTTTCCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
*
146963 CGGGAGCTTTT
66 CGGGAACTTTT
*
146974 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
*
147039 CGGGAGCTTTT
66 CGGGAACTTTT
* * *
147050 TGATGTTTTCAAAACCTGCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCAAAAAAAAACC
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTC--CAAAAAGCC
*
147115 TTCGGGAGCTTTT
64 TTCGGGAACTTTT
*
147128 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGGCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
*
147193 CGGGAATTTTT
66 CGGGAACTTTT
*
147204 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
147269 CGGGAACTTTT
66 CGGGAACTTTT
147280 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
147345 CGGGAACTTTT
66 CGGGAACTTTT
147356 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
147421 CGGGAACTTTT
66 CGGGAACTTTT
*
147432 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
147497 CGGGAACTTTT
66 CGGGAACTTTT
147508 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
*
147573 CGGGAGCTTTT
66 CGGGAACTTTT
*
147584 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
147649 CGGGAACTTTT
66 CGGGAACTTTT
*
147660 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
147725 CGGGAACTTTT
66 CGGGAACTTTT
* * *
147736 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
*
147801 CGGGAGCTTTT
66 CGGGAACTTTT
*
147812 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
*
147877 CGGGATCTTTT
66 CGGGAACTTTT
* * * * *
147888 TAATGTTTTC-AAACCCTCAGGGTCAT-TCATAAGACC-TCTGTGCATGATGTTT
1 TGATGTTTTCAAAACCTTC-GGGTCATCT-GTAAGTCCTTCAGTGCATGATGTTT
147940 TCAACATTTC
Statistics
Matches: 929, Mismatches: 33, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
75 22 0.02
76 835 0.90
78 72 0.08
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.35
Consensus pattern (76 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
CGGGAACTTTT
Found at i:148086 original size:3 final size:3
Alignment explanation
Indices: 148078--148195 Score: 159
Period size: 3 Copynumber: 39.7 Consensus size: 3
148068 TCATTTAAAT
** *
148078 TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA TTA GTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
148126 TTA TAA TTA TTA TTA TTG TTA TTA TTA TTA TTTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
*
148172 TTA ATA TTA -TA TT- TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
148196 TAATAAATAA
Statistics
Matches: 100, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
2 4 0.04
3 93 0.93
4 3 0.03
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:149622 original size:27 final size:28
Alignment explanation
Indices: 149562--149630 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
149552 TAATTACAAG
* *
149562 TTTTATTACTT-TTTATATTTAGTTTTAA
1 TTTTATTA-TTGTTTAAATATAGTTTTAA
149590 TTTTATTATTGTTTAAATATA-TTTTAA
1 TTTTATTATTGTTTAAATATAGTTTTAA
149617 TTTTA-TA-TGTTTAA
1 TTTTATTATTGTTTAA
149631 TATTTTAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
25 7 0.18
26 2 0.05
27 13 0.34
28 16 0.42
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.65
Consensus pattern (28 bp):
TTTTATTATTGTTTAAATATAGTTTTAA
Found at i:149636 original size:22 final size:26
Alignment explanation
Indices: 149562--149649 Score: 78
Period size: 28 Copynumber: 3.4 Consensus size: 26
149552 TAATTACAAG
*
149562 TTTTATTACTT-TTTATATTTAGTTTTAA
1 TTTTATTA-TTGTTTA-ATATA-TTTTAA
149590 TTTTATTATTGTTTAAATATATTTTAA
1 TTTTATTATTGTTT-AATATATTTTAA
149617 TTTTA-TA-TGTTT-A-ATATTTTAA
1 TTTTATTATTGTTTAATATATTTTAA
*
149639 TTAGTATTATT
1 TT-TTATTATT
149650 ATTTTATTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
22 11 0.21
23 3 0.06
24 2 0.04
25 6 0.11
26 2 0.04
27 13 0.25
28 15 0.28
29 1 0.02
ACGTcount: A:0.30, C:0.01, G:0.05, T:0.65
Consensus pattern (26 bp):
TTTTATTATTGTTTAATATATTTTAA
Found at i:149664 original size:23 final size:24
Alignment explanation
Indices: 149631--149677 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
149621 ATATGTTTAA
*
149631 TATTTTAATTAGTAT-TATTATTT
1 TATTTTAATTAATATATATTATTT
*
149654 TATTTTTATTAATATATATTATTT
1 TATTTTAATTAATATATATTATTT
149678 GATTAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (24 bp):
TATTTTAATTAATATATATTATTT
Found at i:152903 original size:4 final size:4
Alignment explanation
Indices: 152894--152924 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
152884 GTAAAACCTC
152894 TCTT TCTT TCTT TCTT TCTT TCTTT TCTT TC
1 TCTT TCTT TCTT TCTT TCTT TC-TT TCTT TC
152925 GACGCAAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TCTT
Found at i:168907 original size:17 final size:17
Alignment explanation
Indices: 168887--168924 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
168877 ATAAAATATG
168887 ACTTATCAGAAAATTTA
1 ACTTATCAGAAAATTTA
*
168904 ACTTATCAGAAAATTTG
1 ACTTATCAGAAAATTTA
168921 ACTT
1 ACTT
168925 TTTTGGTCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (17 bp):
ACTTATCAGAAAATTTA
Found at i:168991 original size:29 final size:29
Alignment explanation
Indices: 168929--168992 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
168919 TGACTTTTTT
*
168929 GGTCAAAATCAACGTTCAATGGTCAGACC
1 GGTCAAAATCAACGGTCAATGGTCAGACC
* * * * *
168958 AGTCAAAGTTAACGGTCAATGGTCATATC
1 GGTCAAAATCAACGGTCAATGGTCAGACC
168987 GGTCAA
1 GGTCAA
168993 CAGGTCGGTC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.23
Consensus pattern (29 bp):
GGTCAAAATCAACGGTCAATGGTCAGACC
Found at i:177000 original size:3 final size:3
Alignment explanation
Indices: 176992--177039 Score: 62
Period size: 3 Copynumber: 16.0 Consensus size: 3
176982 ATTATTCTTT
* *
176992 TAA TAA TAA TAA T-A TATA TAA TAA TTA TAA TAA TAA TAA TAA CAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
177037 TAA
1 TAA
177040 ATAAATAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:177012 original size:12 final size:13
Alignment explanation
Indices: 176994--177047 Score: 64
Period size: 12 Copynumber: 4.5 Consensus size: 13
176984 TATTCTTTTA
176994 ATAATAATAATAT
1 ATAATAATAATAT
177007 AT-ATAATAAT-T
1 ATAATAATAATAT
177018 ATAATAATAATA-
1 ATAATAATAATAT
*
177030 ATAACAATAA-AT
1 ATAATAATAATAT
177042 A-AATAA
1 ATAATAA
177048 ATAAATGGGT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
11 8 0.22
12 26 0.72
13 2 0.06
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (13 bp):
ATAATAATAATAT
Found at i:177331 original size:39 final size:40
Alignment explanation
Indices: 177288--177383 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 40
177278 TTGAACAAGC
*
177288 TCTTCTCATTGTGAACTTCTTCTTC-CTCTTCAGATAAGT
1 TCTTCTCATTATGAACTTCTTCTTCTCTCTTCAGATAAGT
* * * *
177327 TCTTCTCATTATAAACTTCTTCTTCTTTCTTCAGGTGAGT
1 TCTTCTCATTATGAACTTCTTCTTCTCTCTTCAGATAAGT
177367 TCTTCTCATTATGAACT
1 TCTTCTCATTATGAACT
177384 CTACCTGGCA
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
39 23 0.46
40 27 0.54
ACGTcount: A:0.19, C:0.24, G:0.09, T:0.48
Consensus pattern (40 bp):
TCTTCTCATTATGAACTTCTTCTTCTCTCTTCAGATAAGT
Found at i:177500 original size:43 final size:43
Alignment explanation
Indices: 177439--177582 Score: 249
Period size: 43 Copynumber: 3.4 Consensus size: 43
177429 GTTGAACAAA
*
177439 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAG
1 TTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGACGAG
177482 TTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGACGAG
1 TTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGACGAG
*
177525 TTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAG--G-TGAG
1 TTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGACGAG
177565 TTCTTCTCATTATGAACT
1 TTCTTCTCATTATGAACT
177583 CTACCTGGCA
Statistics
Matches: 99, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
40 21 0.21
41 1 0.01
43 77 0.78
ACGTcount: A:0.18, C:0.24, G:0.11, T:0.47
Consensus pattern (43 bp):
TTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGACGAG
Found at i:177624 original size:199 final size:192
Alignment explanation
Indices: 177288--177695 Score: 708
Period size: 199 Copynumber: 2.1 Consensus size: 192
177278 TTGAACAAGC
*
177288 TCTTCTCATTGTGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATAAACTTCTTCTTCT
1 TCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATAAACTTCTTCTTCT
*
177353 TTCTTCAGGTGAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAAT
66 TTCTTCAGGTGAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTGATCCATCAAATGATGAAT
177418 TCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGT
131 TCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGT
* *
177483 TCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGACGAGTTCTTCTCATTATGAACTTCTTC
1 TCTTCTCATTATGAACTTCTTCTTC-CTCTTCAGAT-A--AGTTCTTCTCATTATAAACTTCTTC
177548 TTCTTTCTTCAGGTGAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTGATCCATCAAATGAT
62 TTCTTTCTTCAGGTGAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTGATCCATCAAATGAT
177613 GAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAG
127 GAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAG
177678 T
192 T
*
177679 TCTTCTCATTAAGAACT
1 TCTTCTCATTATGAACT
177696 CGACCTGGTA
Statistics
Matches: 204, Mismatches: 5, Indels: 7
0.94 0.02 0.03
Matches are distributed among these distances:
195 24 0.12
196 29 0.14
197 1 0.00
199 150 0.74
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.41
Consensus pattern (192 bp):
TCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATAAACTTCTTCTTCT
TTCTTCAGGTGAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTGATCCATCAAATGATGAAT
TCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGT
Found at i:177915 original size:224 final size:224
Alignment explanation
Indices: 177523--178034 Score: 916
Period size: 224 Copynumber: 2.3 Consensus size: 224
177513 TCAGATGACG
* * *
177523 AGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGGTGAGTTCTTCTCATTATGAACTCTACC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT-T-GC
* *
177588 TGGCAATGCTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGA
64 TGGCAACGCTGATCCATCAAATGATGAATTCAAACAAAAAGTTGAACAAATTCTTCTCATTATGA
177653 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAAGAACTCGACCTGGTAATGCTGATCCAT
129 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAAGAACTCGACCTGGTAATGCTGATCCAT
177718 CGAATGATGAATTCAAGCGAAAAGTTGAACA
194 CGAATGATGAATTCAAGCGAAAAGTTGAACA
177749 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTGCTG
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTGCTG
* * * *
177814 GCAACGCTGATCCATCGAATGATGAATTCGAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAAC
66 GCAACGCTGATCCATCAAATGATGAATTCAAACAAAAAGTTGAACAAATTCTTCTCATTATGAAC
177879 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAAGAACTCGACCTGGTAATGCTGATCCATCG
131 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAAGAACTCGACCTGGTAATGCTGATCCATCG
177944 AATGATGAATTCAAGCGAAAAGTTGAACA
196 AATGATGAATTCAAGCGAAAAGTTGAACA
*
177973 AGTTCTTCTCATTATGAACTTCTTATTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTG
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTG
178035 ACCTGGTAAT
Statistics
Matches: 276, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
224 217 0.79
225 1 0.00
226 58 0.21
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (224 bp):
AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTGCTG
GCAACGCTGATCCATCAAATGATGAATTCAAACAAAAAGTTGAACAAATTCTTCTCATTATGAAC
TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAAGAACTCGACCTGGTAATGCTGATCCATCG
AATGATGAATTCAAGCGAAAAGTTGAACA
Found at i:178041 original size:113 final size:113
Alignment explanation
Indices: 177523--178044 Score: 863
Period size: 113 Copynumber: 4.6 Consensus size: 113
177513 TCAGATGACG
* *
177523 AGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGGTGAGTTCTTCTCATTATGAACTCT-AC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT-TGAC
* * *
177587 CTGGCAATGCTGATCCATCAAATGATGAATTCAAAC-AAAAGGTTGAACA
65 CTGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAA-GTTGAACA
* * *
177636 AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAAGAACTCGACC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTGACC
177701 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
66 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
177749 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTG--C
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTGACC
* * * *
177812 TGGCAACGCTGATCCATCGAATGATGAATTCGAGCAAAAAGTTGAACA
66 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
* *
177860 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAAGAACTCGACC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTGACC
177925 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
66 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
*
177973 AGTTCTTCTCATTATGAACTTCTTATTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTGACC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTGACC
178038 TGGTAAT
66 TGGTAAT
178045 ACTGGTACTG
Statistics
Matches: 381, Mismatches: 24, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
111 105 0.28
113 272 0.71
114 4 0.01
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.36
Consensus pattern (113 bp):
AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTGACC
TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
Found at i:178933 original size:114 final size:114
Alignment explanation
Indices: 178770--178989 Score: 323
Period size: 114 Copynumber: 1.9 Consensus size: 114
178760 GATCATGCAG
* * * * * * *
178770 TTCATCTTTTAATTCCAATGATTGGTTCTGTGGTTCCTACCGAACCAGATCAGATGACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGATTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
*
178835 AAACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAA
66 AAACTTCCAAAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAA
* * *
178884 TTCATCTTTCAAATCCAATGATTGATTTTGGGGTTCATACCAAATCAGATCATATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGATTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
* *
178949 ACACTTCCAAAAGATGTTATTGGGTCTTCTTATTTCTACTA
66 AAACTTCCAAAAGATGCTATTGGGTCTTCTTATTTCTACTA
178990 CGAGAACGTA
Statistics
Matches: 93, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
114 93 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATGATTGATTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
AAACTTCCAAAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAA
Found at i:187022 original size:15 final size:15
Alignment explanation
Indices: 187002--187030 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
186992 TGCAATGAAT
187002 AATGAATGTATGCAG
1 AATGAATGTATGCAG
187017 AATGAATGTATGCA
1 AATGAATGTATGCA
187031 AAAGGTATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.28
Consensus pattern (15 bp):
AATGAATGTATGCAG
Found at i:190318 original size:15 final size:14
Alignment explanation
Indices: 190288--190327 Score: 64
Period size: 15 Copynumber: 2.9 Consensus size: 14
190278 CTCTGATAGA
190288 AAAAT-AAATAATG
1 AAAATAAAATAATG
190301 AAAATAAAATACATG
1 AAAATAAAATA-ATG
190316 AAAATAAAATAA
1 AAAATAAAATAA
190328 AATATAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 5 0.20
14 6 0.24
15 14 0.56
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.20
Consensus pattern (14 bp):
AAAATAAAATAATG
Found at i:191194 original size:27 final size:26
Alignment explanation
Indices: 191164--191245 Score: 74
Period size: 27 Copynumber: 3.0 Consensus size: 26
191154 TTTATTATAT
*
191164 ATATATATATATATAATAATAAAAATA
1 ATATATAAATATA-AATAATAAAAATA
* * *
191191 ATATTTAAATATAAACAAGTAAAATTA
1 ATATATAAATATAAATAA-TAAAAATA
* * *
191218 AAACATAAATAAACAATAATAAAAATA
1 ATATATAAATATA-AATAATAAAAATA
191245 A
1 A
191246 AATTAGAACT
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
26 4 0.09
27 35 0.81
28 4 0.09
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.29
Consensus pattern (26 bp):
ATATATAAATATAAATAATAAAAATA
Found at i:192573 original size:3 final size:3
Alignment explanation
Indices: 192565--192630 Score: 116
Period size: 3 Copynumber: 22.0 Consensus size: 3
192555 ATTATTCTTT
192565 TAA TAA TAA TAA TAA TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
192611 T-A TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA
192631 ATAAATAAAT
Statistics
Matches: 61, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.03
3 56 0.92
4 3 0.05
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:192645 original size:9 final size:10
Alignment explanation
Indices: 192566--192638 Score: 91
Period size: 9 Copynumber: 7.5 Consensus size: 10
192556 TTATTCTTTT
192566 AATAATAAT-
1 AATAATAATA
192575 AATAATAATA
1 AATAATAATA
*
192585 TATAATAAT-
1 AATAATAATA
192594 AATAATAAT-
1 AATAATAATA
192603 AATAATAATA
1 AATAATAATA
192613 TAATAATAAT-
1 -AATAATAATA
192623 AATAATAAATA
1 AATAAT-AATA
192634 AATAA
1 AATAA
192639 ATAAAATGGG
Statistics
Matches: 57, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
9 32 0.56
10 11 0.19
11 14 0.25
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
AATAATAATA
Found at i:193302 original size:59 final size:59
Alignment explanation
Indices: 193193--193308 Score: 146
Period size: 59 Copynumber: 2.0 Consensus size: 59
193183 AACATAATGA
** *
193193 ATAGTCAAGTGACCATTTTATAACTTTTAGTAGTCAAGGGACTAATAAAGCAACATCTT
1 ATAGTCAAGTGACCATTTTATAACTTTTAACAGTCAAGGGACTAACAAAGCAACATCTT
* * *
193252 ATAGTC-AGTGGACTATTTTATAACTTTTAACAGTC-TGTGACTCAACAAAGCAACATC
1 ATAGTCAAGT-GACCATTTTATAACTTTTAACAGTCAAGGGACT-AACAAAGCAACATC
193309 CTACAAATGA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
58 8 0.16
59 41 0.84
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (59 bp):
ATAGTCAAGTGACCATTTTATAACTTTTAACAGTCAAGGGACTAACAAAGCAACATCTT
Found at i:197633 original size:3 final size:3
Alignment explanation
Indices: 197625--197720 Score: 117
Period size: 3 Copynumber: 33.0 Consensus size: 3
197615 TTAATATATT
*
197625 TAA TAA TAA TAA -AA -AA TAA TAA TAA TAA TAA TAA TAA -AA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
197670 TGA TAA TAA TAT TAA TAA TGA TAA TAA TAA TAT TAA TAA TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
197718 TAA
1 TAA
197721 AATGGATAAA
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
2 6 0.08
3 74 0.93
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:197728 original size:12 final size:11
Alignment explanation
Indices: 197633--197735 Score: 57
Period size: 12 Copynumber: 8.9 Consensus size: 11
197623 TTTAATAATA
*
197633 ATAA-AAAATA
1 ATAATAAAATG
*
197643 ATAATAATAATA
1 ATAATAA-AATG
**
197655 ATAATAAAAAA
1 ATAATAAAATG
* *
197666 ATAATGATAATA
1 ATAAT-AAAATG
*
197678 ATATTAATAATG
1 ATAATAA-AATG
197690 ATAATAATAAT-
1 ATAATAA-AATG
197701 ATTAATAATAATG
1 A-TAATAA-AATG
197714 ATAATAAAATGG
1 ATAATAAAAT-G
*
197726 ATAAAAAAAT
1 ATAATAAAAT
197736 AGTATCTTCA
Statistics
Matches: 78, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
10 4 0.05
11 15 0.19
12 58 0.74
13 1 0.01
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (11 bp):
ATAATAAAATG
Found at i:198252 original size:111 final size:113
Alignment explanation
Indices: 197968--198731 Score: 1130
Period size: 111 Copynumber: 6.8 Consensus size: 113
197958 TCTTGATGAG
197968 TTCTTCTCATTATGAACTT-TT-TTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTAC-CT
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTT-CTCT
* * * *
198030 GGTAATGTTGATCCATCAACTGATGAATTCAAGCAAAAGGTTGAACAAA
65 GGAAAAGATGATCCATCAAGTGATGAATTCAAGCAAAAGGTTGAACAAA
*
198079 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
* *
198144 GAAAAGAATGATCCATCAAGTGATGAATTTAAACAAAAGG-TGAACAAA
66 GAAAAG-ATGATCCATCAAGTGATGAATTCAAGCAAAAGGTTGAACAAA
198192 TTCTTCTCATTATGAAC-TCTTCTT-CTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
* * *
198255 GAAACGATGATCCATCAATTTGATGAATTCAAGCAAAAGG-TG-ACAAG
66 GAAAAGATGATCCATCAA-GTGATGAATTCAAGCAAAAGGTTGAACAAA
*
198302 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAG---TTCTCATTATGAACCTTCTCTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
* *
198364 GAAAAGAATGATCCATCAAGTGATGAATTTAAGCAAAAGGTTGAACAAG
66 GAAAAG-ATGATCCATCAAGTGATGAATTCAAGCAAAAGGTTGAACAAA
198413 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC-TT-TCTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
* * * * *
198476 GAAAGGATGATCCACCAA-TGATGGATTCATGTAAAAGGTTGAACAAA
66 GAAAAGATGATCCATCAAGTGATGAATTCAAGCAAAAGGTTGAACAAA
* *
198523 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCCTTATGAACTTTCTCTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
* *
198588 GAAAAGAATGATCCATCAAGTGATGAATTTAAGCAAAAGGTTGAACAAG
66 GAAAAG-ATGATCCATCAAGTGATGAATTCAAGCAAAAGGTTGAACAAA
198637 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA-ATGA-TTCTTCTCATTATG-ACTTTCTCTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
* *
198699 GAAACGATGATCCATCAATTTGATGAAATTCAA
66 GAAAAGATGATCCATCAA-GTGATG-AATTCAA
198732 ATCTTTGCTA
Statistics
Matches: 596, Mismatches: 38, Indels: 37
0.89 0.06 0.06
Matches are distributed among these distances:
109 45 0.08
110 138 0.23
111 167 0.28
112 61 0.10
113 85 0.14
114 100 0.17
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (113 bp):
TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
GAAAAGATGATCCATCAAGTGATGAATTCAAGCAAAAGGTTGAACAAA
Found at i:198643 original size:224 final size:227
Alignment explanation
Indices: 197966--198731 Score: 1242
Period size: 224 Copynumber: 3.4 Consensus size: 227
197956 GCTCTTGATG
197966 AGTTCTTCTCATTATGAACTT-TT-TTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTAC-
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTT-CT
* * * *
198028 CTGGTAATGTTGATCCATCAACTGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATG
65 CTGGAAACGATGATCCATCAATTGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATG
198093 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAATGATCC
130 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAATGATCC
*
198158 ATCAAGTGATGAATTTAAACAAAAGG-TGAACA
195 ATCAAGTGATGAATTTAAGCAAAAGGTTGAACA
*
198190 AATTCTTCTCATTATGAAC-TCTTCTT-CTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
*
198253 TGGAAACGATGATCCATCAATTTGATGAATTCAAGCAAAAGG-TG-ACAAGTTCTTCTCATTATG
66 TGGAAACGATGATCCATCAA-TTGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATG
198316 AACTTCTTCTTCCTTCTTCAGATGAG---TTCTCATTATGAACCTTCTCTGGAAAAGAATGATCC
130 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAATGATCC
198378 ATCAAGTGATGAATTTAAGCAAAAGGTTGAACA
195 ATCAAGTGATGAATTTAAGCAAAAGGTTGAACA
198411 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC-TT-TC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
* * * * *
198474 TGGAAAGGATGATCCACCAA-TGATGGATTCATGTAAAAGGTTGAACAAATTCTTCTCATTATGA
66 TGGAAACGATGATCCATCAATTGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGA
* * *
198538 ATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCCTTATGAACTTTCTCTGGAAAAGAATGATCCA
131 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAATGATCCA
198603 TCAAGTGATGAATTTAAGCAAAAGGTTGAACA
196 TCAAGTGATGAATTTAAGCAAAAGGTTGAACA
198635 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA-ATGA-TTCTTCTCATTATG-ACTTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
198697 TGGAAACGATGATCCATCAATTTGATGAAATTCAA
66 TGGAAACGATGATCCATCAA-TTGATG-AATTCAA
198732 ATCTTTGCTA
Statistics
Matches: 504, Mismatches: 21, Indels: 32
0.90 0.04 0.06
Matches are distributed among these distances:
219 17 0.03
220 63 0.12
221 89 0.18
222 25 0.05
223 101 0.20
224 177 0.35
225 27 0.05
226 5 0.01
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (227 bp):
AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
TGGAAACGATGATCCATCAATTGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGA
ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAATGATCCA
TCAAGTGATGAATTTAAGCAAAAGGTTGAACA
Found at i:200542 original size:13 final size:12
Alignment explanation
Indices: 200533--200578 Score: 65
Period size: 13 Copynumber: 3.6 Consensus size: 12
200523 TCATTTTCTA
200533 TTTTTTTTTTTC
1 TTTTTTTTTTTC
200545 TTTTTTTTCTTTTC
1 -TTTTTTT-TTTTC
200559 TTTTTTCTTTTTC
1 TTTTTT-TTTTTC
200572 TTTTTTT
1 TTTTTTT
200579 CTTCAAGCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
12 1 0.03
13 24 0.77
14 6 0.19
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (12 bp):
TTTTTTTTTTTC
Found at i:200563 original size:27 final size:28
Alignment explanation
Indices: 200502--200578 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
200492 CTTGACTCAC
* * *
200502 CTTTCTTTTTCTTCTCTTTTTTCATTTT
1 CTTTTTTTTTTTTCTTTTTTTTCATTTT
200530 CTATTTTTTTTTTTCTTTTTTTTC-TTTT
1 CT-TTTTTTTTTTTCTTTTTTTTCATTTT
*
200558 CTTTTTTCTTTTTCTTTTTTT
1 CTTTTTTTTTTTTCTTTTTTT
200579 CTTCAAGCAT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 18 0.41
28 8 0.18
29 18 0.41
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.82
Consensus pattern (28 bp):
CTTTTTTTTTTTTCTTTTTTTTCATTTT
Found at i:200579 original size:14 final size:14
Alignment explanation
Indices: 200513--200581 Score: 81
Period size: 14 Copynumber: 4.9 Consensus size: 14
200503 TTTCTTTTTC
*
200513 TTCTCTTTTTTCATT
1 TTCT-TTTTTTCTTT
200528 TTCTATTTTTT-TTT
1 TTCT-TTTTTTCTTT
200542 TTCTTTTTTT-TCTT
1 TTCTTTTTTTCT-TT
200556 TTC-TTTTTTCTTT
1 TTCTTTTTTTCTTT
200569 TTCTTTTTTTCTT
1 TTCTTTTTTTCTT
200582 CAAGCATAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
13 18 0.37
14 21 0.43
15 10 0.20
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (14 bp):
TTCTTTTTTTCTTT
Done.