Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006763.1 Hibiscus syriacus cultivar Beakdansim tig00017093_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127392

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2021--2068
24
2.0
24
83
0
60
14
14
18
52
1.75
8118--8190
32
2.3
32
95
0
128
16
30
21
31
1.95
8770--8815
23
2.0
23
88
12
69
67
4
13
15
1.38
12167--12214
25
2.0
24
83
4
60
12
12
18
56
1.67
12351--13040
367
1.9
370
90
2
1120
35
11
26
25
1.91
16341--16391
19
2.6
20
90
3
77
43
5
15
35
1.71
17290--17346
30
1.9
30
85
0
78
59
8
5
26
1.48
20469--20519
19
2.6
20
90
3
77
43
5
15
35
1.71
38911--38961
24
2.1
24
85
7
68
11
11
15
60
1.58
42772--42828
17
3.3
17
80
11
71
77
5
15
1
1.03
42782--42842
24
2.6
23
82
12
70
75
3
16
4
1.11
42773--42828
11
4.9
11
74
23
53
78
3
16
1
0.97
42773--42827
30
1.9
29
85
10
78
78
3
16
1
0.98
44674--44709
18
2.0
18
100
0
72
66
16
5
11
1.40
50005--50044
19
2.0
20
85
4
55
20
10
0
70
1.16
51349--51401
9
5.7
9
75
16
54
83
9
7
0
0.83
51366--51393
12
2.3
12
100
0
56
78
7
14
0
0.95
51348--51413
20
3.4
20
80
10
66
78
12
9
0
0.95
51361--51393
12
2.5
13
85
14
50
78
9
12
0
0.95
51348--51420
10
7.5
10
75
11
55
76
13
9
0
1.01
51349--51420
30
2.5
29
82
8
85
77
12
9
0
0.98
60329--60369
11
3.6
11
83
6
55
85
7
2
4
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75133--75194
16
3.9
17
91
6
78
51
0
1
46
1.10
75142--75195
2
27.5
2
92
3
92
50
0
1
48
1.11
81030--81170
73
1.9
72
81
7
169
21
17
20
40
1.92
84259--84306
24
1.9
26
83
8
64
54
4
4
37
1.39
88625--88654
11
2.7
11
100
0
60
10
6
36
46
1.64
90432--90614
91
2.0
91
86
0
258
21
27
22
28
1.99
98126--98185
30
2.0
31
83
3
77
26
8
10
55
1.61
98352--98390
20
1.9
21
94
5
71
28
15
10
46
1.78
99074--99124
20
2.6
20
90
3
77
35
15
5
43
1.71
99537--99576
19
2.0
20
90
4
64
20
15
0
65
1.28
106308--106367
30
2.0
31
83
3
77
26
8
10
55
1.61
107277--107322
20
2.3
20
85
3
58
39
15
6
39
1.73
107740--107779
19
2.0
20
90
4
64
20
15
0
65
1.28
109377--109551
91
1.9
91
91
0
287
22
25
22
29
1.99
110327--110380
23
2.3
24
87
3
83
64
11
14
9
1.48
110327--110386
24
2.6
23
86
2
84
65
10
16
8
1.47
111601--111643
23
1.9
21
81
13
50
32
18
13
34
1.90
113347--113527
91
2.0
91
88
0
272
20
25
22
30
1.98
115078--115107
2
15.5
2
93
6
53
50
0
0
50
1.00

Tables:   1

The End!