Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006764.1 Hibiscus syriacus cultivar Beakdansim tig00017095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58450

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5411--5460
24
2.1
24
85
7
66
60
14
2
24
1.45
7032--7079
25
2.0
24
84
12
62
33
25
10
31
1.89
7808--7945
7
19.4
7
70
16
88
77
2
15
5
1.04
7829--7928
38
2.6
37
81
12
96
77
3
15
5
1.07
7873--7936
10
6.5
10
76
15
53
79
1
17
1
0.89
7810--7946
44
3.2
43
73
15
124
77
2
15
5
1.04
9763--9807
22
2.0
22
100
0
90
40
17
22
20
1.92
9965--10898
228
4.1
233
82
4
1142
32
16
17
33
1.92
10745--10827
43
2.0
43
83
7
107
26
20
21
31
1.98
10012--10905
457
1.9
453
83
4
1121
32
16
17
33
1.93
11178--11619
134
3.3
134
82
3
507
30
22
16
29
1.96
14323--14386
31
2.1
31
85
5
85
29
6
25
39
1.80
20990--21044
30
1.9
28
85
10
76
41
5
16
36
1.71
29924--29965
21
2.0
20
86
4
57
38
2
7
52
1.42
30279--30463
94
2.0
94
97
0
352
26
13
23
36
1.92
33755--33799
22
2.0
23
91
4
74
24
0
4
71
1.05
33765--33815
3
18.0
3
84
11
63
31
0
1
66
1.03
35221--35250
3
10.0
3
92
0
51
33
3
0
63
1.11
39354--39385
15
2.1
15
94
0
55
25
18
9
46
1.79
46246--46312
20
3.4
18
76
15
55
80
0
16
2
0.83
46246--46303
24
2.4
24
80
11
66
81
0
15
3
0.83
47819--48236
113
3.8
113
84
5
534
37
14
19
28
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48587--48642
17
3.4
17
78
7
62
28
0
3
67
1.07
48591--48644
3
19.0
3
81
11
60
29
0
3
66
1.09
50101--50149
20
2.5
20
77
12
57
28
6
0
65
1.16
50256--50292
19
1.9
19
88
0
56
27
0
0
72
0.84
50154--50386
118
2.0
117
82
4
281
37
8
8
45
1.65
54587--54771
54
3.4
53
84
4
210
38
15
12
33
1.85
54616--54779
54
3.0
54
89
0
247
40
15
10
33
1.82

Tables:   1

The End!