genome.fa.s6766.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006766.1 Hibiscus syriacus cultivar Beakdansim tig00017098_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  208440

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1273--1402	59	2.2	59	88	0	188	30	25	16	27	1.97
6034--6063	14	2.1	14	93	0	51	46	10	6	36	1.64
7739--7875	59	2.3	58	83	2	184	29	25	16	28	1.97
9431--9464	15	2.3	15	90	10	52	61	0	8	29	1.26
15715--15745	10	3.1	10	100	0	62	19	29	9	41	1.83
15808--15839	10	3.1	10	91	8	55	18	31	31	18	1.95
21371--21416	18	2.6	17	83	10	56	30	19	26	23	1.98
22061--22095	18	1.9	18	94	0	61	20	22	31	25	1.98
25280--25340	31	1.9	32	86	6	88	21	19	18	40	1.91
28992--29025	2	17.0	2	100	0	68	50	0	0	50	1.00
35382--35428	22	2.1	22	96	0	85	34	10	27	27	1.90
51612--51694	29	2.8	29	92	1	139	43	9	14	32	1.78
56370--56452	29	2.8	29	92	1	139	43	9	14	32	1.78
57647--57936	144	2.0	144	99	0	571	33	17	20	28	1.95
57653--57976	144	2.2	144	93	2	508	34	17	19	28	1.94
67218--67281	17	3.7	17	91	2	101	28	29	9	32	1.88
68079--68180	45	2.3	44	79	5	107	34	18	21	25	1.96
81324--81713	78	5.0	78	92	1	667	35	15	15	34	1.89
88947--88985	20	2.0	20	84	0	51	23	7	23	46	1.78
89145--89205	21	2.9	21	95	0	104	9	24	39	26	1.86
89186--89248	20	2.9	21	79	9	65	17	25	34	22	1.95
95631--95692	32	1.9	32	83	6	81	64	11	0	24	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97348--97392	15	3.1	14	81	9	54	71	0	8	20	1.12
97348--97399	10	5.2	10	84	9	61	69	1	9	19	1.26
101507--101543	16	2.4	16	90	4	58	37	16	13	32	1.87
102083--102341	46	5.7	46	94	1	434	38	7	22	32	1.81
103714--103773	23	2.6	24	89	5	88	71	0	1	26	0.95
103714--103773	28	2.1	28	84	0	75	71	0	1	26	0.95
110038--110092	23	2.4	23	75	0	56	12	20	12	54	1.70
116518--117081	55	10.3	55	88	0	772	28	26	15	29	1.96
116556--117960	102	13.3	105	82	8	949	24	25	18	31	1.97
117012--117947	51	18.1	51	87	5	1159	22	25	19	32	1.97
118329--118526	36	5.5	36	86	2	238	20	19	23	36	1.95
131024--131065	15	2.6	16	77	7	50	33	2	0	64	1.07
131721--131747	3	9.0	3	100	0	54	66	0	0	33	0.92
132109--132155	20	2.3	22	75	17	57	38	0	6	55	1.26
132573--132729	21	7.8	20	72	7	84	38	24	17	19	1.92
132696--132940	20	12.2	20	83	5	246	36	24	18	20	1.95
133650--133696	24	2.0	24	87	8	69	25	14	21	38	1.92
133870--133894	12	2.1	12	100	0	50	72	0	28	0	0.86
136193--136428	33	6.8	34	81	14	238	46	18	21	14	1.84
136207--136428	19	12.7	19	77	18	250	46	18	20	14	1.84
136207--136428	71	3.2	71	79	12	237	46	18	20	14	1.84
136235--136422	52	3.6	52	97	0	340	47	17	21	14	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136418--136534	53	2.2	53	98	1	227	13	23	17	44	1.85
136437--136534	19	5.4	19	84	13	143	14	22	17	45	1.84
136637--136673	14	2.6	14	91	0	65	45	21	0	32	1.52
138593--138727	19	7.6	19	75	16	110	45	25	18	9	1.80
138649--138705	14	3.7	14	72	20	51	45	28	19	7	1.76
138630--138722	33	2.8	33	91	0	159	47	24	19	8	1.77
138593--138727	52	2.5	54	77	18	149	45	25	18	9	1.80
138723--138851	19	7.3	19	75	17	125	8	17	28	45	1.77
138723--138814	33	2.8	33	93	3	150	7	18	28	45	1.76
138899--139270	93	4.0	93	98	0	719	45	19	12	22	1.83
140993--141076	19	4.7	19	77	14	97	45	22	21	10	1.82
140971--141076	52	2.0	52	94	0	185	46	20	22	10	1.81
141102--141138	19	1.9	19	100	0	74	10	21	18	48	1.78
141095--141171	20	3.8	20	83	6	93	11	25	18	44	1.84
141669--141860	20	9.6	20	84	4	217	19	20	25	34	1.96
142266--142388	39	3.2	38	78	9	131	27	24	28	19	1.99
143675--143798	60	2.1	59	83	8	155	30	23	5	40	1.78
143936--144108	60	2.9	60	81	1	195	45	4	19	30	1.69
152557--152587	3	10.3	3	92	0	53	3	32	0	64	1.09
163670--163731	20	2.9	21	85	7	81	17	25	35	20	1.95
172994--173040	2	24.5	2	87	8	71	44	0	0	55	0.99
173079--173507	36	11.9	35	77	14	308	47	3	6	43	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173106--173506	217	1.8	214	82	7	513	46	3	5	44	1.44
173152--173484	146	2.3	141	75	12	327	47	3	6	43	1.45
173544--173595	9	5.7	9	77	4	50	17	3	0	78	0.89
173544--173593	22	2.2	22	85	7	64	18	4	0	78	0.91
173548--173595	19	2.6	18	83	6	60	18	4	0	77	0.93
173540--173587	10	5.0	10	82	10	55	18	2	0	79	0.84
174790--174828	18	2.2	18	90	0	60	10	2	7	79	1.02
174825--174883	8	7.4	8	75	19	52	37	1	0	61	1.07
178411--178461	23	2.2	23	100	0	102	31	13	0	54	1.39
179889--179919	15	2.1	15	93	0	53	45	0	0	54	0.99
180171--180200	2	15.0	2	100	0	60	50	0	0	50	1.00
180412--180539	63	2.0	64	95	1	231	36	8	12	42	1.74
191178--191216	4	9.8	4	100	0	78	74	0	0	25	0.82
200453--200504	18	2.9	18	73	0	50	28	28	26	15	1.96
200435--200504	36	1.9	36	82	0	86	27	30	27	15	1.96
203974--204052	35	2.2	36	93	2	133	45	17	18	17	1.86
204988--207474	4	635.2	4	93	5	4394	24	0	25	49	1.51

Tables:   1

The End!