genome.fa.s6769.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006769.1 Hibiscus syriacus cultivar Beakdansim tig00017105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141894

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657--694	19	2.1	18	90	9	60	44	13	5	36	1.66
6204--6283	35	2.2	37	86	4	110	27	3	37	31	1.74
11435--11514	35	2.2	37	88	4	119	27	3	38	30	1.74
11851--11901	19	2.6	20	87	3	68	45	5	15	33	1.71
13390--13451	19	3.0	20	88	6	90	12	17	1	67	1.30
13702--13771	25	2.7	26	82	6	79	77	2	14	5	1.07
14735--14778	22	2.0	22	82	8	54	56	11	18	13	1.66
19531--19583	24	2.2	25	89	3	81	0	5	15	79	0.91
19546--19585	8	5.0	8	85	8	55	0	2	12	85	0.71
27192--27217	12	2.2	12	100	0	52	50	7	26	15	1.71
33284--33339	16	3.5	16	86	13	71	76	3	19	0	0.93
33286--33334	25	2.0	25	88	8	73	77	2	20	0	0.87
43644--43712	28	2.5	28	82	11	81	76	2	14	5	1.08
57571--57611	18	2.3	18	88	12	59	80	4	14	0	0.87
57573--57646	18	4.4	16	72	24	55	77	2	17	2	1.01
58900--58953	24	2.2	24	86	0	72	38	16	14	29	1.89
62042--62182	36	3.9	36	85	0	183	29	36	3	30	1.74
62080--62129	11	4.2	12	73	19	50	30	36	2	32	1.69
62042--62182	72	2.0	72	89	0	219	29	36	3	30	1.74
62555--62601	25	2.0	24	84	16	62	74	8	17	0	1.05
65578--65616	17	2.3	17	100	0	78	28	23	17	30	1.97
66011--66151	36	3.9	36	88	0	201	28	37	4	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67532--67608	6	12.2	6	69	20	50	76	0	16	6	0.98
67526--67615	27	3.6	24	78	19	87	76	1	16	5	1.03
67526--67608	11	6.8	11	76	22	53	77	0	16	6	0.97
67526--67615	10	9.5	10	72	19	52	76	1	16	5	1.03
68860--68923	24	2.7	23	77	15	67	37	15	18	28	1.92
70984--71068	11	7.2	11	72	22	66	31	36	3	28	1.74
70981--71085	36	2.9	36	95	1	185	30	36	4	28	1.78
75171--75221	20	2.6	20	90	3	77	35	15	5	43	1.71
79216--79266	20	2.6	20	90	3	77	35	15	5	43	1.71
83256--83306	20	2.6	20	90	3	77	35	15	5	43	1.71
85253--85324	13	5.8	12	76	17	60	29	2	36	31	1.72
85234--85336	35	2.9	35	92	1	170	29	2	36	31	1.72
89275--89321	22	2.2	20	85	11	58	0	12	6	80	0.88
89711--89797	11	7.3	12	76	21	78	29	1	36	32	1.65
89693--89795	35	2.9	35	95	1	179	29	1	36	32	1.69
89694--89793	11	8.6	12	71	24	72	29	2	37	32	1.69
92816--92858	23	1.9	21	81	13	50	34	13	18	32	1.90
94074--94126	23	2.2	24	90	3	81	9	16	11	62	1.54
95581--95685	36	2.9	36	90	1	158	31	35	2	30	1.72
95584--95668	11	7.2	11	74	22	75	32	35	1	30	1.66
98075--98106	16	2.0	16	100	0	64	31	18	6	43	1.75
101359--101409	19	2.6	20	90	3	77	43	5	15	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103441--103472	16	2.0	16	100	0	64	31	18	6	43	1.75
106596--106700	36	2.9	36	85	1	149	31	33	3	31	1.76
114920--114971	19	2.6	21	90	6	81	46	7	13	32	1.72
118996--119047	19	2.6	21	90	6	81	46	7	13	32	1.72
120927--120969	23	1.9	21	81	13	50	32	18	13	34	1.90
124817--124859	23	1.9	21	81	13	50	32	18	13	34	1.90
135719--135757	15	2.5	15	87	4	51	66	5	12	15	1.41

Tables:   1

The End!