Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000677.1 Hibiscus syriacus cultivar Beakdansim tig00001313_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88990

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8351--8405
22
2.4
23
78
6
58
23
5
5
65
1.35
18668--18706
16
2.4
17
86
4
53
84
0
0
15
0.62
19418--19488
24
3.0
24
91
0
106
39
16
21
22
1.92
20558--20586
12
2.4
12
100
0
58
51
6
0
41
1.28
22004--22119
2
59.5
2
74
14
100
45
0
4
50
1.21
24694--24751
2
29.0
2
100
0
116
50
0
0
50
1.00
25081--25123
16
2.7
16
80
20
54
67
9
0
23
1.19
30793--30837
21
2.1
21
87
0
63
31
28
24
15
1.96
31203--31257
2
27.5
2
100
0
110
50
0
0
49
1.00
32030--32126
32
3.1
32
78
14
128
28
17
18
35
1.94
32029--32129
31
3.2
31
81
10
125
28
18
18
33
1.95
32117--32190
30
2.4
30
95
2
130
22
21
24
31
1.99
32125--32213
30
3.0
30
90
1
108
21
20
26
31
1.98
53370--53765
59
6.7
59
92
0
621
34
11
17
36
1.86
54294--54387
45
2.1
45
88
4
136
48
4
21
25
1.68
58515--58552
18
2.1
19
85
14
53
42
0
2
55
1.14
58845--58875
16
1.9
16
93
0
53
74
3
3
19
1.10
62125--62176
21
2.6
19
82
14
52
53
1
0
44
1.11
75310--75360
24
2.1
24
88
0
75
13
13
13
58
1.63
77519--77562
2
22.0
2
100
0
88
50
0
0
50
1.00
79279--79321
17
2.5
17
96
0
77
34
0
25
39
1.56
80038--80062
11
2.3
11
100
0
50
40
8
36
16
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80086--80143
24
2.6
22
82
12
73
58
15
12
13
1.63
84201--84225
11
2.3
11
100
0
50
40
8
36
16
1.77
84248--84298
24
2.1
24
92
0
84
58
15
13
11
1.63

Tables:   1

The End!