Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006770.1 Hibiscus syriacus cultivar Beakdansim tig00017106_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67998

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1889--1935
19
2.4
21
75
10
55
23
8
8
59
1.54
11189--11231
22
2.0
22
90
0
68
32
27
23
16
1.96
16213--16242
13
2.4
13
94
5
53
26
30
0
43
1.55
18513--18555
12
3.7
11
81
6
50
13
11
2
72
1.22
18516--18559
23
1.9
23
90
9
72
13
11
4
70
1.31
24869--24910
17
2.4
17
84
15
59
0
9
11
78
0.96
30194--30222
6
5.0
6
91
8
51
0
17
0
82
0.66
30190--30222
11
3.1
11
91
4
50
0
18
0
81
0.68
30190--30222
17
2.0
16
94
5
57
0
18
0
81
0.68
32530--32584
24
2.3
24
96
0
101
21
18
25
34
1.96
34986--35036
19
2.6
20
87
3
68
45
5
13
35
1.68
38231--38283
24
2.3
24
83
6
65
7
16
15
60
1.57
38955--39005
19
2.6
20
87
3
68
45
5
15
33
1.71
40235--40285
20
2.6
20
90
3
77
35
15
5
43
1.71
43822--43861
19
2.0
20
86
13
57
67
0
10
22
1.20
44277--44325
19
2.5
20
84
15
66
44
8
12
34
1.71
47804--47843
19
2.0
20
86
13
57
67
0
10
22
1.20
48256--48307
19
2.6
21
87
6
72
48
3
13
34
1.61
50549--50575
11
2.5
11
100
0
54
37
22
11
29
1.89
51389--51440
19
2.6
21
90
6
81
46
5
13
34
1.67
56684--56749
34
2.0
33
81
3
78
9
15
3
72
1.21
59172--59237
34
2.0
33
81
3
78
9
15
3
72
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61670--61727
21
2.8
20
70
17
55
6
13
3
75
1.13
62431--62480
21
2.5
21
90
6
77
48
6
12
34
1.65
66015--66050
15
2.3
15
90
4
54
36
8
19
36
1.82
66259--66310
21
2.6
21
84
6
72
44
5
11
38
1.65

Tables:   1

The End!