Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006772.1 Hibiscus syriacus cultivar Beakdansim tig00017120_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73981

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--338
3
112.7
3
90
6
526
65
0
34
0
0.93
3418--3443
9
2.9
9
100
0
52
65
0
23
11
1.25
7905--7956
14
4.0
14
75
25
60
76
0
15
7
0.99
7909--7935
11
2.5
11
100
0
54
77
0
14
7
0.97
7905--7959
25
2.2
24
87
9
76
78
0
14
7
0.96
7875--7959
11
7.3
11
69
10
53
76
0
16
7
0.99
7875--7975
36
2.8
33
78
11
94
75
0
15
8
1.04
10151--10241
42
2.2
41
84
2
119
24
19
23
32
1.97
10313--10347
16
2.2
16
89
0
52
60
2
2
34
1.26
10570--10600
16
2.0
15
93
6
53
54
6
6
32
1.51
9998--10963
257
3.8
260
87
1
1374
35
15
15
33
1.90
11078--11117
3
13.3
3
89
0
62
32
5
0
62
1.17
12323--12359
11
3.3
11
85
7
56
24
13
0
62
1.31
12323--12365
12
3.7
12
78
6
52
23
11
0
65
1.25
18700--18913
76
2.8
76
78
1
214
41
14
15
28
1.86
18672--18932
76
3.4
75
73
6
211
40
12
15
30
1.85
24057--24149
9
9.2
9
68
20
51
25
20
5
48
1.71
24060--24159
30
3.3
30
85
5
130
28
20
5
47
1.71
24057--24185
30
4.5
27
81
8
100
25
20
5
48
1.71
24083--24172
27
3.3
27
81
14
87
27
18
4
48
1.67
24455--24614
57
2.8
54
83
6
158
36
25
16
21
1.93
28107--28132
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30354--30510
21
7.5
21
89
1
235
29
19
26
24
1.98
30353--30507
62
2.5
63
91
3
251
30
20
25
23
1.98
30353--30510
83
1.9
84
89
1
246
30
19
25
24
1.98
31098--31167
34
2.1
34
88
0
104
31
35
11
21
1.89
37827--37869
21
2.0
21
81
0
50
27
30
25
16
1.97
37897--37934
20
1.9
20
88
0
58
23
34
31
10
1.89
39131--39236
31
3.4
31
77
6
97
30
17
18
33
1.95
39241--39463
30
7.4
30
97
0
410
23
18
23
34
1.96
42794--42836
21
2.0
21
81
0
50
27
30
25
16
1.97
42864--42901
20
1.9
20
88
0
58
23
34
31
10
1.89
44100--44205
31
3.4
31
79
6
97
29
17
20
32
1.96
44143--44224
31
2.6
31
80
0
101
28
15
24
31
1.96
44210--44432
30
7.4
30
98
0
419
23
18
23
33
1.97
45163--45191
2
14.5
2
100
0
58
48
0
0
51
1.00
45210--45242
16
2.1
16
94
0
57
54
6
9
30
1.56
47190--47243
27
2.0
27
96
0
99
38
3
11
46
1.57
50737--50777
17
2.4
17
100
0
82
43
7
12
36
1.70
52992--53025
17
1.9
18
88
5
52
32
5
11
50
1.63
55270--55373
28
3.9
25
74
17
86
37
0
0
60
1.10
55270--55368
18
5.4
19
68
23
54
37
1
1
60
1.10
55341--55379
8
4.6
8
87
6
51
30
0
0
69
0.89
55348--55404
19
3.2
17
73
14
53
33
1
0
64
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63260--63323
20
3.0
22
73
13
71
68
0
25
6
1.12
63365--63401
12
3.1
12
100
0
74
59
0
24
16
1.37
63368--63401
6
5.7
6
85
0
50
61
0
23
14
1.33
64563--64704
66
2.2
63
82
7
160
36
19
16
27
1.93
65331--65389
2
29.5
2
100
0
118
50
0
0
49
1.00
66080--66135
22
2.5
22
88
0
67
16
25
28
30
1.96
66098--66155
18
2.9
20
80
12
66
17
20
32
29
1.95
70442--70487
20
2.3
20
88
3
67
26
21
13
39
1.90
70480--70519
20
2.0
20
90
0
62
30
15
17
37
1.90
70819--70849
15
2.1
15
100
0
62
32
22
6
38
1.80
72469--72510
19
2.4
17
84
11
50
45
0
7
47
1.30
72478--72513
16
2.1
18
90
10
58
44
0
5
50
1.25

Tables:   1

The End!