genome.fa.s6774.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006774.1 Hibiscus syriacus cultivar Beakdansim tig00017124_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108281

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3372--3428	30	1.9	29	82	10	71	59	1	1	36	1.18
4581--4637	6	9.3	6	80	16	55	56	0	0	43	0.99
4593--4637	14	3.2	14	87	0	63	57	0	0	42	0.98
4806--5012	76	2.8	76	80	9	225	23	20	16	40	1.91
4845--4957	36	2.9	40	76	10	144	22	18	15	44	1.86
4845--5018	36	4.8	36	75	5	127	23	20	16	40	1.91
19167--19206	2	20.0	2	100	0	80	50	0	0	50	1.00
20144--20207	27	2.4	27	97	0	119	26	21	25	26	2.00
22237--22277	21	2.0	21	100	0	82	31	24	29	14	1.95
22242--22287	21	2.2	21	88	0	65	30	30	21	17	1.96
37348--37906	51	10.5	53	78	12	501	24	27	18	30	1.98
37348--37686	104	3.3	103	85	8	447	23	27	18	30	1.98
37636--37767	67	2.0	65	94	2	228	24	25	19	30	1.98
39212--39283	9	8.4	9	80	11	80	12	8	0	79	0.94
39200--39259	18	3.4	17	80	13	59	10	6	0	83	0.81
39192--39285	27	3.3	26	75	20	91	10	7	1	80	0.94
39192--39274	25	3.2	25	81	11	87	10	7	1	80	0.95
50366--50438	34	2.2	32	83	13	87	73	2	16	6	1.16
50361--50426	20	3.1	21	74	20	66	75	1	18	4	1.04
50506--50563	29	2.0	29	100	0	116	27	10	20	41	1.85
50511--50580	29	2.4	28	86	9	88	22	7	24	45	1.77
54155--54190	18	1.9	20	88	11	58	22	8	0	69	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54147--54198	13	4.3	12	75	18	54	25	5	0	69	1.10
54151--54193	18	2.4	17	82	17	52	23	6	0	69	1.12
58043--58085	2	21.5	2	100	0	86	48	0	0	51	1.00
63928--63954	14	1.9	14	100	0	54	0	11	0	88	0.50
64253--64352	34	3.3	34	68	28	114	42	1	0	57	1.05
64244--64439	57	3.4	57	94	0	356	44	1	1	53	1.17
64239--64393	15	10.8	15	66	16	87	44	1	0	53	1.13
64422--64487	21	3.2	21	78	18	59	51	0	3	45	1.16
64377--64479	42	2.5	42	81	9	113	47	0	1	49	1.19
64425--64483	19	3.1	18	79	13	64	49	0	3	47	1.18
64442--64487	21	2.2	21	85	14	69	56	0	2	41	1.11
64239--64480	114	2.1	113	83	2	313	45	1	1	52	1.16
64666--64755	42	2.2	42	95	2	164	55	0	4	40	1.20
65012--65041	14	2.1	14	93	0	51	36	6	20	36	1.79
65170--65239	31	2.2	29	77	20	70	47	0	4	48	1.21
65413--65521	31	3.6	31	71	13	93	48	0	0	49	1.13
65492--65537	21	2.1	23	88	8	69	52	0	2	45	1.13
65485--65545	29	2.1	29	81	6	70	49	0	1	49	1.10
65499--65554	21	2.6	21	76	17	53	51	0	1	46	1.11
67164--67221	30	1.9	30	83	13	75	37	20	3	37	1.70
67431--67470	18	2.4	17	91	8	64	27	0	0	72	0.85
68004--68053	20	2.5	20	78	12	59	40	2	2	56	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67973--68064	11	9.2	10	67	23	52	40	1	3	55	1.23
67971--68057	31	2.8	30	79	10	95	41	1	3	54	1.25
68119--68169	27	2.0	24	85	14	68	56	5	3	33	1.42
68634--68720	31	2.8	30	81	10	95	54	3	1	41	1.25
68629--68696	19	3.5	20	73	15	54	54	1	2	41	1.24
69007--69037	14	2.2	14	94	0	53	25	0	0	74	0.82
69107--69166	19	3.1	19	72	9	66	53	1	0	45	1.10
69129--69206	27	2.8	28	79	11	106	44	2	1	51	1.23
69235--69286	2	26.0	2	100	0	104	50	0	0	50	1.00
70097--70128	16	2.0	16	93	0	55	6	0	34	59	1.23
72936--72982	20	2.3	20	78	10	51	27	6	4	61	1.39
73111--73585	43	11.0	43	74	12	336	26	21	5	46	1.72
73126--73585	85	5.4	85	74	12	359	26	21	5	46	1.73
73404--73502	49	2.0	48	90	5	155	24	23	5	47	1.71
73362--73530	92	1.8	93	85	3	243	25	23	5	46	1.73
73962--74006	16	3.1	16	75	24	62	51	0	0	48	1.00
73957--74022	28	2.3	28	76	7	71	53	4	1	40	1.31
74609--74665	29	2.0	29	85	0	78	33	5	17	43	1.71
75837--75864	3	9.3	3	100	0	56	35	0	0	64	0.94
76295--76320	13	2.0	13	100	0	52	69	7	23	0	1.14
76334--76367	14	2.4	14	95	0	59	88	0	11	0	0.52
84719--85603	234	3.8	231	87	2	1191	33	15	16	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85284--85378	42	2.3	41	83	1	118	23	25	23	28	1.99
89521--89568	25	1.9	25	83	8	62	33	4	18	43	1.69
90895--90933	18	2.2	18	90	0	60	79	2	0	17	0.84
91467--91630	83	2.0	83	87	2	240	39	6	9	45	1.62
91694--91737	23	1.9	22	86	9	61	27	18	4	50	1.66
100379--100532	83	1.8	84	90	1	247	39	3	11	46	1.56
100381--100550	83	2.0	83	84	4	180	40	5	10	44	1.61
102724--102963	133	1.8	132	87	6	360	40	7	7	44	1.62
104027--104071	13	3.5	13	81	0	54	17	46	20	15	1.84
104064--104102	15	2.4	16	87	12	53	12	28	28	30	1.93
106525--106610	24	3.5	24	81	6	84	19	15	16	48	1.81
106549--106617	24	2.8	24	80	2	75	17	11	15	55	1.70

Tables:   1

The End!