Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006776.1 Hibiscus syriacus cultivar Beakdansim tig00017128_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74409

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
735--816
17
5.1
16
72
27
50
2
17
4
75
1.08
1119--1159
22
1.9
21
85
5
55
29
2
36
31
1.71
4850--4903
20
2.7
20
94
0
90
20
27
11
40
1.86
4870--5104
47
5.0
47
87
2
355
21
23
10
44
1.83
4851--4948
20
4.6
20
76
16
79
21
26
8
43
1.80
5572--5683
21
5.4
21
75
15
99
27
31
11
29
1.92
11269--11332
20
3.2
19
75
18
58
68
9
0
21
1.17
13740--14163
138
3.1
135
83
4
487
43
11
15
29
1.82
17338--17411
30
2.5
30
88
0
112
22
25
21
29
1.99
17674--17718
20
2.2
20
88
0
63
22
11
11
55
1.66
20163--20498
43
7.8
43
87
1
440
19
21
24
34
1.96
20163--20498
173
1.9
173
86
3
480
19
21
24
34
1.96
20162--20536
130
2.9
125
81
7
408
19
21
22
36
1.95
21766--21814
23
2.2
23
88
3
73
42
22
14
20
1.88
23101--23272
26
7.3
26
68
21
137
46
11
19
22
1.82
23113--23272
46
3.5
45
88
3
239
45
11
21
21
1.84
25346--25454
37
2.9
37
94
0
191
39
14
14
31
1.87
26000--26100
39
2.6
39
81
13
111
30
2
2
63
1.24
25994--26173
41
4.5
41
75
12
137
26
4
1
67
1.18
26118--26182
32
2.0
31
85
14
87
13
7
0
78
0.95
26120--26270
44
3.5
44
69
16
107
15
8
0
74
1.09
26135--26231
32
3.1
32
80
14
94
14
11
0
74
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26155--26229
21
3.0
27
78
17
65
14
12
0
73
1.10
30430--30497
5
13.8
5
75
16
54
76
2
20
0
0.92
30436--30498
13
5.2
12
73
19
60
77
3
19
0
0.90
30430--30497
18
3.7
19
79
13
81
76
2
20
0
0.92
30430--30502
27
2.7
26
80
19
87
75
2
21
0
0.93
30454--30501
16
3.0
15
79
11
51
77
2
20
0
0.88
30438--30490
8
6.2
8
79
12
54
75
3
20
0
0.96
38504--38681
94
1.9
95
87
3
261
33
15
23
28
1.95
39038--39441
59
6.9
59
92
1
668
35
12
22
28
1.91
53534--53662
29
4.4
28
73
11
84
59
3
10
25
1.48
53747--53798
22
2.4
22
96
3
97
48
3
23
25
1.68
55170--55276
50
2.1
50
78
10
112
19
19
23
37
1.94
55742--55806
8
8.0
8
77
8
60
84
9
3
3
0.83
55740--55805
25
2.6
25
78
7
80
84
7
3
4
0.84
55744--55805
33
1.9
32
90
3
97
85
8
3
3
0.81
57444--57485
21
2.0
21
85
0
57
28
28
9
33
1.88
61383--61425
18
2.3
19
84
8
61
18
41
4
34
1.71
64588--64810
95
2.3
95
86
1
304
30
16
26
26
1.97
64739--64810
22
3.6
19
75
15
56
33
15
26
25
1.95
64759--64803
22
2.0
23
86
4
65
35
13
22
28
1.92
64757--64810
22
2.6
20
77
11
63
33
14
24
27
1.94
65133--65350
59
3.7
59
91
0
355
36
12
21
29
1.91

Tables:   1

The End!