genome.fa.s6778.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006778.1 Hibiscus syriacus cultivar Beakdansim tig00017141_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95117

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3014--3096	40	2.1	38	84	4	103	24	15	22	37	1.93
5592--5634	17	2.5	17	80	0	50	81	4	6	6	0.98
9717--9768	24	2.2	24	89	3	79	28	1	5	63	1.28
9725--9775	24	2.1	24	85	7	68	37	0	5	56	1.23
10852--10902	22	2.4	20	79	20	59	41	1	0	56	1.10
13418--13469	25	2.1	25	82	7	61	25	13	11	50	1.75
14283--14320	20	2.0	18	90	10	58	42	0	0	57	0.98
14608--14648	20	2.0	20	95	0	73	17	39	29	14	1.89
17393--17453	20	3.1	20	90	2	97	19	39	27	13	1.89
19886--19952	21	3.2	21	100	0	134	28	10	26	34	1.90
20801--20847	20	2.3	20	100	0	94	34	42	12	10	1.78
21955--22002	19	2.5	20	82	3	62	52	6	12	29	1.63
23438--23539	21	5.0	21	90	3	154	20	37	28	13	1.91
23887--23956	34	2.1	32	89	5	104	31	15	31	21	1.95
24276--24326	23	2.2	23	82	0	57	45	1	0	52	1.12
24350--24387	17	2.2	17	86	9	51	55	0	0	44	0.99
24345--24449	53	2.0	54	88	5	160	48	0	1	48	1.18
27140--27170	11	2.7	11	95	5	53	0	9	0	90	0.46
28746--28791	14	3.3	14	81	0	56	32	0	17	50	1.47
29531--29685	77	2.0	77	100	0	310	32	14	11	41	1.82
32540--32657	40	2.9	38	75	12	110	34	20	11	33	1.89
32824--32856	12	2.8	12	95	0	57	42	27	18	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50978--51043	33	2.0	32	97	2	123	42	3	3	51	1.32
52291--52599	43	7.2	43	74	9	247	33	19	22	24	1.97
52273--52589	87	3.7	86	79	6	286	32	18	23	25	1.97
61523--61562	2	20.0	2	100	0	80	50	0	0	50	1.00
62495--62531	15	2.5	15	91	4	58	5	16	67	10	1.38
65069--65096	12	2.3	12	100	0	56	25	0	0	75	0.81
65259--65295	14	2.6	15	83	8	51	59	0	2	37	1.12
66314--66387	20	3.7	20	76	3	85	40	17	22	18	1.91
66331--66406	21	3.7	21	78	3	91	40	17	25	17	1.90
66314--66424	41	2.7	41	92	4	179	42	17	22	18	1.89
66417--66469	20	2.7	20	93	0	88	28	28	18	24	1.98
66657--66700	22	2.0	22	95	0	79	20	45	15	18	1.85
66964--67001	20	1.9	20	88	0	58	13	15	21	50	1.78
68320--68364	18	2.5	18	88	0	72	26	44	15	13	1.83
68846--68912	20	3.4	20	81	2	73	38	23	22	14	1.92
68901--68958	14	3.9	14	77	16	62	50	24	15	10	1.75
68885--68975	32	2.8	33	89	3	148	48	21	17	12	1.80
68992--69082	14	5.9	14	74	20	83	8	17	25	48	1.76
68987--69139	19	8.9	18	72	19	114	11	19	24	45	1.83
68987--69140	33	4.5	33	86	9	211	11	19	24	45	1.82
69083--69137	20	2.8	19	89	5	83	16	23	23	36	1.94
70992--71043	13	3.9	13	75	5	50	32	0	19	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71178--71235	20	2.9	20	94	0	98	17	22	22	37	1.93
72084--72177	20	4.7	20	80	2	89	23	18	24	34	1.96
72064--72178	20	5.7	20	78	5	88	23	17	23	35	1.95
72167--72259	20	4.5	21	78	4	100	17	24	18	39	1.91
72106--72240	41	3.3	41	82	4	139	19	21	20	38	1.94
72167--72259	41	2.3	41	100	0	186	17	24	18	39	1.91
76494--76552	31	2.0	30	86	6	84	32	1	8	57	1.39
86973--87002	15	2.0	15	100	0	60	40	6	33	20	1.78
93030--93071	21	2.0	21	100	0	84	19	28	9	42	1.82

Tables:   1

The End!