Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006779.1 Hibiscus syriacus cultivar Beakdansim tig00017173_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58615

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
870--944
21
3.6
21
74
0
60
21
21
18
38
1.93
865--955
42
2.2
41
84
2
110
25
18
20
35
1.96
976--1033
20
2.9
20
85
10
82
29
24
15
31
1.95
2691--2750
29
2.1
29
100
0
120
26
0
38
35
1.57
4927--4962
14
2.6
14
95
0
63
19
5
5
69
1.29
5737--5898
81
2.0
81
84
6
211
32
18
19
29
1.96
6311--6359
22
2.2
22
96
0
89
42
10
16
30
1.81
16906--17036
43
3.1
43
79
2
138
30
16
17
35
1.93
21174--21216
3
14.3
3
100
0
86
34
0
0
65
0.93
27326--27382
30
1.9
30
96
0
105
43
17
3
35
1.66
34410--34496
8
10.0
9
72
16
60
78
0
19
2
0.86
34421--34499
8
10.7
7
77
14
63
79
0
17
2
0.84
34411--34499
27
3.4
25
79
10
81
79
0
17
2
0.83
35458--35886
137
3.1
136
83
4
497
28
28
14
27
1.95
35461--35963
137
3.7
136
79
8
416
28
27
14
29
1.95
35461--35963
274
1.8
273
82
5
638
28
27
14
29
1.95
36203--36279
3
26.0
3
79
12
88
29
0
5
64
1.15
36206--36266
22
2.8
22
87
7
81
31
0
6
62
1.21
38000--38025
2
13.0
2
100
0
52
50
0
0
50
1.00
38282--38333
16
3.4
15
75
19
54
17
5
1
75
1.10
38282--38336
25
2.2
25
84
9
69
16
5
1
76
1.06
39081--39133
27
2.0
27
96
0
97
20
32
7
39
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44474--44634
65
2.5
63
83
6
207
31
21
16
29
1.96
50438--50489
20
2.6
20
93
0
95
28
26
25
19
1.98
52010--52053
21
2.1
21
82
0
52
9
38
15
36
1.80
52401--52458
28
2.0
28
83
9
73
18
3
22
55
1.58
52642--52676
2
17.5
2
100
0
70
48
0
0
51
1.00
53190--53314
46
2.7
46
85
3
155
27
23
18
31
1.97
56065--56409
93
3.7
92
80
4
352
19
33
19
27
1.96

Tables:   1

The End!