Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000678.1 Hibiscus syriacus cultivar Beakdansim tig00001316_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73149

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2649--2704
17
3.3
17
69
18
53
32
12
8
46
1.73
2626--2704
34
2.3
34
97
0
149
35
12
7
44
1.71
4502--4532
2
16.0
2
93
6
55
51
0
0
48
1.00
16315--16389
30
2.5
30
80
6
80
44
0
6
49
1.28
23849--23900
20
2.6
20
84
0
59
44
3
1
50
1.31
24195--24308
59
1.9
59
89
1
174
31
22
6
39
1.79
26256--26294
19
2.1
18
85
4
51
69
0
0
30
0.89
26456--26486
2
15.5
2
100
0
62
48
0
0
51
1.00
28089--28185
24
4.0
24
69
5
79
43
15
17
23
1.87
30286--30332
22
2.2
22
92
3
78
46
12
10
29
1.76
30374--30856
239
2.0
239
93
2
824
28
22
24
25
1.99
31830--31900
37
1.9
36
82
2
88
47
1
14
36
1.52
31958--32003
22
2.0
24
87
8
69
71
2
0
26
0.97
32217--32259
2
21.5
2
100
0
86
51
0
0
48
1.00
34161--34197
14
2.6
15
83
12
51
62
13
5
18
1.50
40040--40075
2
18.0
2
100
0
72
50
0
0
50
1.00
42160--42195
18
1.9
19
88
5
56
61
2
2
33
1.25
44045--44154
21
5.3
21
63
19
61
21
20
23
34
1.97
44086--44154
20
3.4
20
70
18
70
21
21
23
33
1.97
44029--44267
41
5.8
41
93
1
390
21
20
25
31
1.98
44146--44257
21
5.4
21
68
19
92
18
21
29
30
1.97
45049--45088
6
6.7
6
94
0
62
5
17
45
32
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45085--45329
41
5.9
41
92
1
400
30
24
24
21
1.99
45085--45329
83
3.0
83
95
0
420
30
24
24
21
1.99
52839--52866
14
2.0
14
100
0
56
50
0
35
14
1.43
60806--60831
13
2.0
13
100
0
52
23
30
7
38
1.83
66082--66118
18
2.1
18
100
0
74
48
5
27
18
1.70

Tables:   1

The End!