genome.fa.s6781.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006781.1 Hibiscus syriacus cultivar Beakdansim tig00017182_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63328

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3431--3473	18	2.5	18	85	7	63	25	4	2	67	1.22
3701--3785	8	10.0	8	71	16	55	28	2	0	69	1.01
3721--3771	17	2.9	18	80	11	52	23	1	0	74	0.92
3715--3785	26	2.8	25	79	14	65	26	1	0	71	0.94
3663--3760	34	2.9	34	68	7	81	26	2	2	69	1.10
7735--7768	15	2.3	15	90	5	52	82	2	14	0	0.79
7734--7800	19	3.3	20	79	8	64	79	7	11	1	1.00
9296--9400	36	2.9	36	91	2	165	24	23	13	38	1.91
9296--9405	37	3.0	37	90	2	168	26	23	12	37	1.91
9314--9770	102	4.5	102	89	1	639	29	21	12	36	1.91
9517--9603	37	2.4	37	86	5	115	25	21	13	39	1.90
9618--9704	36	2.4	36	84	0	102	28	22	11	36	1.89
9314--9770	203	2.2	204	88	1	684	29	21	12	36	1.91
9646--9774	66	2.0	66	90	0	204	31	23	12	33	1.92
10637--11609	105	9.3	105	90	3	1419	33	26	18	22	1.96
10637--11609	205	4.7	209	91	2	1426	33	26	18	22	1.96
12607--12649	18	2.5	17	85	7	61	25	4	2	67	1.22
21871--21945	31	2.4	31	84	8	107	32	9	10	48	1.70
22062--22116	20	2.7	20	78	13	58	54	1	1	41	1.21
22111--22159	23	2.2	24	78	14	59	46	0	2	51	1.12
22931--23010	29	2.8	29	98	0	151	30	36	26	7	1.84
23007--23086	36	2.2	36	100	0	160	18	26	38	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23061--23203	46	3.1	46	72	11	166	20	18	41	19	1.91
23025--23203	92	2.1	86	89	10	276	20	19	40	18	1.91
23833--23876	21	2.1	21	91	0	70	29	0	15	54	1.42
23863--23944	42	2.0	41	82	13	100	47	0	6	46	1.27
24368--24397	15	1.9	16	93	6	53	43	0	10	46	1.37
24571--24615	21	2.2	21	84	4	56	46	6	6	40	1.56
24652--24726	26	3.0	25	79	11	64	49	6	1	42	1.37
27746--27780	17	2.0	18	94	5	63	57	0	5	37	1.23
27976--28013	12	3.2	12	92	3	60	52	0	5	42	1.24
28026--28227	37	5.4	37	74	14	137	44	1	9	44	1.48
28045--28227	26	7.2	26	79	12	184	44	2	9	43	1.48
28014--28201	98	1.9	99	94	1	333	44	2	9	44	1.47
28229--28302	21	3.2	21	66	23	58	44	0	9	45	1.36
28224--28418	49	4.2	49	85	10	300	43	0	9	47	1.35
28396--28433	14	2.7	14	100	0	76	34	0	13	52	1.40
30701--30749	22	2.2	22	96	0	89	38	14	2	44	1.56
30693--30819	31	4.4	30	72	19	94	44	10	1	44	1.47
30726--30801	31	2.5	31	83	12	95	42	7	2	47	1.46
31066--31159	29	3.0	29	79	11	98	50	8	0	41	1.33
31065--31119	18	3.4	18	65	31	52	52	9	0	38	1.33
31100--31178	32	2.3	32	82	8	95	46	7	0	45	1.31
31514--31557	11	3.9	11	76	5	52	45	20	13	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31513--31559	23	2.1	22	88	4	67	42	21	17	19	1.89
31610--31732	61	2.0	61	96	0	228	27	34	20	17	1.95
31722--31779	28	2.1	28	96	0	107	43	25	29	1	1.65
31783--31894	29	3.9	29	92	3	190	16	26	39	16	1.91
33631--33742	49	2.3	50	90	3	174	47	5	0	47	1.25
36192--36273	40	2.0	40	100	0	164	36	12	25	25	1.91
36300--36551	121	2.1	121	82	3	319	41	21	11	25	1.86
44124--44153	15	2.0	15	93	0	51	40	10	16	33	1.82
45240--45417	54	3.3	54	69	13	157	43	4	1	50	1.29
45343--45453	15	8.1	14	69	16	74	42	4	0	52	1.28
45395--45453	13	4.5	13	78	19	68	37	3	0	59	1.14
45337--45453	40	2.9	41	78	5	130	41	4	0	52	1.26
45402--45452	28	1.9	25	88	11	75	39	1	0	58	1.09
45391--45460	25	2.8	23	76	23	70	37	2	0	60	1.12
45323--45469	41	3.5	42	74	9	133	42	3	0	53	1.22
45408--45485	28	2.8	27	73	13	68	39	1	1	57	1.15
46631--46800	81	2.1	80	78	7	182	40	12	8	38	1.74
49050--49081	2	16.0	2	100	0	64	50	0	0	50	1.00
50766--50805	19	2.1	19	100	0	80	15	32	15	37	1.88
50888--50930	19	2.2	20	88	12	63	44	2	4	48	1.36
56175--56448	55	5.0	55	87	4	378	29	18	21	30	1.97
56870--56921	20	2.6	20	100	0	104	25	26	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56879--56936	20	2.7	23	87	10	79	24	29	13	32	1.94

Tables:   1

The End!