genome.fa.s6785.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006785.1 Hibiscus syriacus cultivar Beakdansim tig00017195_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59942

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2550--2606	28	2.0	29	86	3	80	47	12	15	24	1.80
6193--6244	22	2.4	22	83	0	68	67	0	23	9	1.20
7290--7344	26	2.1	26	89	0	83	45	5	5	43	1.50
7290--7362	26	2.8	25	82	13	78	43	5	4	46	1.45
7490--7559	26	2.7	25	78	6	86	51	2	0	45	1.16
8266--8342	14	5.2	14	70	11	64	46	9	6	37	1.61
8265--8343	30	2.6	30	91	0	122	46	8	6	37	1.60
8265--8355	16	6.0	14	69	15	65	45	9	6	38	1.64
8323--8367	17	2.6	18	86	10	67	42	13	8	35	1.75
17290--17320	15	2.1	15	100	0	62	19	12	38	29	1.89
17849--17924	36	2.1	36	97	0	143	44	1	32	21	1.60
24557--24631	26	2.9	26	85	0	96	26	26	17	29	1.97
25438--25484	21	2.4	21	89	10	73	21	19	23	36	1.95
26345--26403	27	2.2	27	100	0	118	42	16	11	28	1.84
26355--26444	27	3.3	27	87	1	108	46	22	6	24	1.75
35565--35832	104	2.6	104	88	1	376	35	19	8	36	1.83
35834--37727	103	18.8	103	76	9	1484	34	17	9	38	1.82
35568--38540	295	9.9	297	72	14	779	34	17	9	38	1.83
36879--42168	206	26.0	206	78	7	5083	34	17	10	38	1.83
37557--37609	28	1.9	28	88	3	81	41	13	7	37	1.72
37730--41501	103	36.9	103	80	6	3814	34	17	10	37	1.83
41525--42168	103	6.3	103	82	5	725	33	16	11	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41525--42168	204	3.2	204	81	4	721	33	16	11	38	1.84
41525--42168	307	2.1	307	84	4	845	33	16	11	38	1.84
42945--42983	18	2.2	18	100	0	78	17	51	20	10	1.74
42975--43006	7	4.4	7	92	7	55	12	34	28	25	1.92
42972--43005	15	2.3	15	100	0	68	14	35	26	23	1.94
45469--45577	24	4.5	24	75	4	103	20	15	16	47	1.82
46361--46580	104	2.1	105	79	4	239	35	19	10	35	1.86
46342--46926	102	5.7	102	75	4	307	32	17	10	38	1.85
46626--47201	300	1.9	298	81	4	703	33	18	10	37	1.86
46932--47201	103	2.6	104	87	4	368	32	20	11	36	1.88
47161--47232	37	2.0	37	94	2	128	23	16	13	45	1.83
47169--47249	37	2.2	37	84	0	99	24	19	9	45	1.81
46924--47571	347	1.9	349	83	5	846	33	18	10	37	1.85
47259--47831	103	5.6	103	79	6	579	34	18	8	38	1.81
47850--48104	101	2.5	103	81	3	282	36	18	7	37	1.79
48054--48135	30	2.7	30	94	0	137	40	14	9	35	1.79
47960--48224	133	2.0	131	86	2	370	36	16	9	37	1.82
48084--48632	103	5.3	103	78	7	517	32	17	11	38	1.86
49365--49456	24	3.8	24	91	0	130	52	18	13	16	1.75
49379--49456	7	13.0	6	69	27	51	48	19	15	16	1.81
49372--49497	48	2.6	48	83	5	157	48	17	15	18	1.82
49377--49460	12	7.0	12	71	10	73	48	19	15	16	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49372--49483	24	4.7	24	85	6	129	48	17	15	18	1.82
49365--49497	24	5.5	25	81	8	125	49	17	15	18	1.80
53239--53272	3	11.3	3	100	0	68	67	0	0	32	0.91
54518--54624	24	4.5	24	77	2	108	50	15	11	22	1.76
54518--54624	48	2.2	47	86	3	142	50	15	11	22	1.76

Tables:   1

The End!