Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006787.1 Hibiscus syriacus cultivar Beakdansim tig00017203_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72159

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6934--6992
21
2.8
21
73
14
59
22
25
27
25
2.00
7529--7554
5
5.2
5
100
0
52
23
57
19
0
1.40
12876--12929
22
2.6
21
88
5
74
18
20
42
18
1.89
13510--13563
21
2.6
21
87
0
72
22
33
16
27
1.95
17071--17105
16
2.2
16
89
0
52
28
0
25
45
1.54
17079--17112
16
2.1
16
88
0
50
26
2
26
44
1.69
26433--26576
65
2.2
65
86
2
200
22
23
18
34
1.96
28448--28477
14
2.1
14
93
0
51
60
16
13
10
1.59
38864--38951
24
3.7
24
80
3
97
48
15
13
21
1.80
38859--38928
12
5.8
12
70
12
54
51
17
14
17
1.77
38857--38965
48
2.3
48
82
9
125
49
15
14
20
1.79
41574--41606
17
2.0
17
88
5
50
60
21
12
6
1.53
42806--42851
23
2.0
23
86
0
65
28
17
41
13
1.86
44320--44365
22
2.1
22
95
0
83
39
13
6
41
1.70
49128--49178
14
3.8
13
80
10
50
60
0
0
39
0.97
61625--61661
16
2.3
16
95
0
65
8
16
5
70
1.30
65808--65845
20
1.9
20
84
10
51
26
23
5
44
1.74
67614--67663
20
2.5
20
93
0
82
46
24
14
16
1.83
67677--67789
20
5.7
19
78
8
93
26
22
9
41
1.84
67656--67785
60
2.1
60
81
13
142
26
22
10
41
1.85
67690--67792
40
2.6
40
80
13
131
26
21
9
42
1.83
68701--68747
24
2.0
24
95
0
85
27
21
17
34
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68706--68752
24
1.9
24
91
4
76
25
21
17
36
1.94
68934--68962
3
9.7
3
100
0
58
65
0
34
0
0.93
70992--71062
21
3.4
20
86
7
97
23
12
39
23
1.89
71055--71104
21
2.4
21
86
0
64
38
16
26
20
1.92
70988--71089
42
2.4
42
77
3
107
27
14
36
21
1.93
71069--71112
21
2.1
21
95
0
79
31
13
31
22
1.93
71422--71505
21
4.0
20
75
9
78
39
35
7
17
1.78
71397--71505
42
2.6
41
80
8
121
36
36
10
16
1.82

Tables:   1

The End!