Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006789.1 Hibiscus syriacus cultivar Beakdansim tig00017207_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47692

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1971--2203
104
2.2
104
96
2
434
24
19
16
39
1.91
2150--2234
35
2.4
35
100
0
170
21
22
12
43
1.86
2183--2514
134
2.5
135
90
4
500
25
22
17
34
1.96
3383--3452
16
4.4
16
82
10
81
8
10
0
81
0.88
3397--3460
27
2.4
27
89
10
96
7
10
0
81
0.88
3390--3442
18
2.8
21
78
21
71
7
11
0
81
0.88
3376--3482
28
4.0
27
80
10
103
7
13
0
78
1.00
3389--3436
11
4.5
11
76
12
55
8
10
0
81
0.88
3404--3464
17
3.6
17
85
14
74
9
9
0
80
0.91
15148--15193
24
1.9
24
100
0
92
50
6
4
39
1.48
15289--15381
2
47.0
2
97
2
179
50
0
0
49
1.00
15449--15541
45
2.0
45
91
4
150
54
12
5
26
1.59
15893--15992
45
2.3
43
94
3
173
49
14
9
28
1.73
17772--17814
3
14.7
3
85
4
61
60
2
0
37
1.10
18582--18896
54
5.9
54
83
4
372
33
20
17
28
1.95
18584--18874
106
2.7
106
86
2
377
33
19
17
28
1.95
19307--19362
19
2.9
19
89
5
85
17
26
21
33
1.96
23023--23070
16
2.9
16
82
11
62
25
4
0
70
1.04
23026--23070
17
2.8
16
78
21
58
24
4
0
71
1.05
23042--23105
26
2.4
26
86
2
92
20
6
1
71
1.15
23112--23164
25
2.2
24
89
3
79
35
1
0
62
1.06
23234--23276
17
2.6
17
79
17
54
23
0
0
76
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23232--23276
15
3.1
15
81
6
58
22
0
0
77
0.76
23236--23286
15
3.2
15
81
13
50
23
1
0
74
0.92
24246--24292
2
23.5
2
100
0
94
48
0
0
51
1.00
24457--24502
16
2.6
19
80
20
71
56
8
4
30
1.49
27267--27324
24
2.4
24
82
0
71
32
15
15
36
1.89
27902--27996
5
18.6
5
98
1
172
18
0
22
58
1.39
29393--29436
20
2.2
20
91
0
70
54
18
18
9
1.69
30135--30294
65
2.5
65
87
5
227
28
18
23
30
1.97
30135--30342
65
3.2
63
79
12
208
26
17
24
31
1.97
32999--33080
23
3.6
22
78
8
94
24
24
26
24
2.00
33003--33100
44
2.2
44
84
10
121
25
22
25
26
2.00
36838--36877
21
1.9
21
85
10
55
35
7
2
55
1.42
39177--39217
16
2.6
16
88
3
57
36
12
21
29
1.90
40740--40776
16
2.3
16
95
0
65
18
16
21
43
1.88
40855--40940
30
2.9
29
75
13
79
44
5
17
32
1.73
44547--44703
65
2.5
63
84
11
198
28
17
23
29
1.97
44547--44751
65
3.2
63
77
15
192
26
18
24
30
1.97
44916--44976
18
3.2
18
75
20
70
45
9
3
40
1.53
44925--44997
21
3.7
21
77
18
93
47
9
1
41
1.44
44916--45001
39
2.2
39
100
0
172
45
10
2
41
1.51
46207--46265
31
1.9
31
96
0
109
32
16
16
33
1.92

Tables:   1

The End!