Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000679.1 Hibiscus syriacus cultivar Beakdansim tig00001317_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132061

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
927--965
19
1.9
19
85
10
51
71
5
7
15
1.26
10825--10874
15
3.3
15
82
2
55
64
0
0
36
0.94
10831--10877
17
2.6
18
80
16
53
61
0
0
38
0.96
11609--11723
36
3.2
36
92
4
196
41
2
6
48
1.44
14240--14270
15
2.1
15
93
0
53
32
16
35
16
1.91
15497--15551
3
18.3
3
81
7
58
65
3
1
29
1.20
20879--20954
28
2.6
28
76
15
75
48
2
5
43
1.39
28365--28396
2
16.0
2
100
0
64
50
0
0
50
1.00
30150--30179
2
15.0
2
92
0
51
53
0
0
46
1.00
32482--32556
30
2.5
31
80
12
93
58
12
13
16
1.63
32482--32586
30
3.5
29
78
10
81
58
11
12
18
1.63
34314--34356
13
3.3
13
93
0
77
16
44
23
16
1.86
34348--34386
7
5.4
7
93
6
69
15
30
28
25
1.96
34348--34386
15
2.7
14
92
7
69
15
30
28
25
1.96
36817--36907
24
3.8
24
85
2
121
25
17
19
37
1.94
36817--36907
47
1.9
48
88
2
139
25
17
19
37
1.94
37959--38007
19
2.8
18
71
22
50
28
6
8
57
1.52
38218--38245
2
14.0
2
100
0
56
50
0
0
50
1.00
39647--39904
129
2.0
129
98
0
498
41
10
10
37
1.74
49759--49789
15
2.1
15
100
0
62
19
41
0
38
1.51
54325--54357
13
2.6
13
85
4
50
54
0
0
45
0.99
54325--54372
25
2.0
24
84
12
62
52
2
0
45
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56386--56568
98
1.9
96
93
2
312
26
13
12
47
1.78
62070--62118
12
3.8
13
79
15
57
53
2
0
44
1.12
69701--69766
32
2.1
32
100
0
132
24
18
6
51
1.68
81885--81917
14
2.4
14
100
0
66
57
6
36
0
1.23
92724--92784
23
2.7
23
84
2
79
54
8
14
22
1.67
106228--106257
7
4.4
7
95
4
53
63
0
0
36
0.95
124347--124487
64
2.2
65
84
1
185
27
18
25
28
1.98
124366--124503
64
2.2
64
84
5
172
28
16
25
29
1.97
124724--124763
20
2.0
21
85
14
57
45
7
5
42
1.54
127792--127934
75
1.9
75
85
1
198
23
29
23
23
1.99

Tables:   1

The End!